makecdfenv: CDF Environment Maker

This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("makecdfenv")
AuthorRafael A. Irizarry <rafa@jhu.edu>, Laurent Gautier <laurent@cbs.dtu.dk>, Wolfgang Huber <w.huber@dkfz-heidelberg.de>, Ben Bolstad <bmb@bmbolstad.com>
Bioconductor views DataImport OneChannel Preprocessing
Date of publicationNone
MaintainerJames W. MacDonald <jmacdon@u.washington.edu>
LicenseGPL (>= 2)
Version1.52.0

View on Bioconductor

Functions

atom Man page
atom<- Man page
atom<-,Cdf-method Man page
atom,Cdf-method Man page
Cdf-class Man page
getInfoInFile Man page
make.cdf.env Man page
make.cdf.package Man page
name.levels Man page
name.levels<- Man page
name.levels<-,Cdf-method Man page
name.levels,Cdf-method Man page
pbase Man page
pbase<- Man page
pbase<-,Cdf-method Man page
pbase,Cdf-method Man page
pbase.levels Man page
pbase.levels<- Man page
pbase.levels<-,Cdf-method Man page
pbase.levels,Cdf-method Man page
pmormm Man page
read.cdffile Man page
show,Cdf-method Man page
tbase Man page
tbase<- Man page
tbase<-,Cdf-method Man page
tbase,Cdf-method Man page
tbase.levels Man page
tbase.levels<- Man page
tbase.levels<-,Cdf-method Man page
tbase.levels,Cdf-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/Cdf.R R/getInfoInFile.R R/make.cdf.env.R R/pmormm.R R/read.cdffile.R
build
build/vignette.rds
configure
configure.in
inst
inst/Code
inst/Code/DESCRIPTION
inst/Code/INDEX
inst/Code/NAMESPACE
inst/Code/R
inst/Code/R/geometry.R inst/Code/R/zzz.R
inst/Code/TITLE
inst/Code/data
inst/Code/data/00Index
inst/Code/man
inst/Code/man/@DIMENVNAME@.Rd
inst/Code/man/@PKGNAME@.Rd
inst/Code/man/geometry.Rd
inst/doc
inst/doc/makecdfenv.R
inst/doc/makecdfenv.Rnw
inst/doc/makecdfenv.pdf
inst/extdata
inst/extdata/Hu6800.CDF.gz
man
man/Cdf-class.Rd man/getInfoInAffyFile.Rd man/make.cdf.env.Rd man/make.cdf.package.Rd man/pmormm.Rd man/read.cdffile.Rd
src
src/Makevars
src/Makevars.in
src/Makevars.win
src/read_cdffile.c
vignettes
vignettes/00Index.dcf
vignettes/makecdfenv.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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