makecdfenv: CDF Environment Maker

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This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.

Author
Rafael A. Irizarry <rafa@jhu.edu>, Laurent Gautier <laurent@cbs.dtu.dk>, Wolfgang Huber <w.huber@dkfz-heidelberg.de>, Ben Bolstad <bmb@bmbolstad.com>
Date of publication
None
Maintainer
James W. MacDonald <jmacdon@u.washington.edu>
License
GPL (>= 2)
Version
1.50.0

View on Bioconductor

Man pages

Cdf-class
Class Cdf
getInfoInAffyFile
get information from Affymetrix data files
make.cdf.env
CDF Environment Maker
make.cdf.package
CDF Environment Package Maker
pmormm
PM or MM
read.cdffile
Read a CDF file

Files in this package

makecdfenv/DESCRIPTION
makecdfenv/NAMESPACE
makecdfenv/R
makecdfenv/R/Cdf.R
makecdfenv/R/getInfoInFile.R
makecdfenv/R/make.cdf.env.R
makecdfenv/R/pmormm.R
makecdfenv/R/read.cdffile.R
makecdfenv/build
makecdfenv/build/vignette.rds
makecdfenv/configure
makecdfenv/configure.in
makecdfenv/inst
makecdfenv/inst/Code
makecdfenv/inst/Code/DESCRIPTION
makecdfenv/inst/Code/INDEX
makecdfenv/inst/Code/NAMESPACE
makecdfenv/inst/Code/R
makecdfenv/inst/Code/R/geometry.R
makecdfenv/inst/Code/R/zzz.R
makecdfenv/inst/Code/TITLE
makecdfenv/inst/Code/data
makecdfenv/inst/Code/data/00Index
makecdfenv/inst/Code/man
makecdfenv/inst/Code/man/@DIMENVNAME@.Rd
makecdfenv/inst/Code/man/@PKGNAME@.Rd
makecdfenv/inst/Code/man/geometry.Rd
makecdfenv/inst/doc
makecdfenv/inst/doc/makecdfenv.R
makecdfenv/inst/doc/makecdfenv.Rnw
makecdfenv/inst/doc/makecdfenv.pdf
makecdfenv/inst/extdata
makecdfenv/inst/extdata/Hu6800.CDF.gz
makecdfenv/man
makecdfenv/man/Cdf-class.Rd
makecdfenv/man/getInfoInAffyFile.Rd
makecdfenv/man/make.cdf.env.Rd
makecdfenv/man/make.cdf.package.Rd
makecdfenv/man/pmormm.Rd
makecdfenv/man/read.cdffile.Rd
makecdfenv/src
makecdfenv/src/Makevars
makecdfenv/src/Makevars.in
makecdfenv/src/Makevars.win
makecdfenv/src/read_cdffile.c
makecdfenv/vignettes
makecdfenv/vignettes/00Index.dcf
makecdfenv/vignettes/makecdfenv.Rnw