Ringo: R Investigation of ChIP-chip Oligoarrays

The package Ringo facilitates the primary analysis of ChIP-chip data. The main functionalities of the package are data read-in, quality assessment, data visualisation and identification of genomic regions showing enrichment in ChIP-chip. The package has functions to deal with two-color oligonucleotide microarrays from NimbleGen used in ChIP-chip projects, but also contains more general functions for ChIP-chip data analysis, given that the data is supplied as RGList (raw) or ExpressionSet (pre- processed). The package employs functions from various other packages of the Bioconductor project and provides additional ChIP-chip-specific and NimbleGen-specific functionalities.

Package details

AuthorJoern Toedling, Oleg Sklyar, Tammo Krueger, Matt Ritchie, Wolfgang Huber
Bioconductor views DataImport Microarray Preprocessing QualityControl TwoChannel
MaintainerJ. Toedling <[email protected]>
Package repositoryView on Bioconductor
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Ringo documentation built on Oct. 31, 2019, 8:57 a.m.