Ringo: R Investigation of ChIP-chip Oligoarrays
Version 1.40.0

The package Ringo facilitates the primary analysis of ChIP-chip data. The main functionalities of the package are data read-in, quality assessment, data visualisation and identification of genomic regions showing enrichment in ChIP-chip. The package has functions to deal with two-color oligonucleotide microarrays from NimbleGen used in ChIP-chip projects, but also contains more general functions for ChIP-chip data analysis, given that the data is supplied as RGList (raw) or ExpressionSet (pre- processed). The package employs functions from various other packages of the Bioconductor project and provides additional ChIP-chip-specific and NimbleGen-specific functionalities.

Package details

AuthorJoern Toedling, Oleg Sklyar, Tammo Krueger, Matt Ritchie, Wolfgang Huber
Bioconductor views DataImport Microarray Preprocessing QualityControl TwoChannel
MaintainerJ. Toedling <[email protected]>
LicenseArtistic-2.0
Version1.40.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Ringo")

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Ringo documentation built on May 31, 2017, 2:20 p.m.