Ringo: R Investigation of ChIP-chip Oligoarrays
Version 1.44.0

The package Ringo facilitates the primary analysis of ChIP-chip data. The main functionalities of the package are data read-in, quality assessment, data visualisation and identification of genomic regions showing enrichment in ChIP-chip. The package has functions to deal with two-color oligonucleotide microarrays from NimbleGen used in ChIP-chip projects, but also contains more general functions for ChIP-chip data analysis, given that the data is supplied as RGList (raw) or ExpressionSet (pre- processed). The package employs functions from various other packages of the Bioconductor project and provides additional ChIP-chip-specific and NimbleGen-specific functionalities.

Package details

AuthorJoern Toedling, Oleg Sklyar, Tammo Krueger, Matt Ritchie, Wolfgang Huber
Bioconductor views DataImport Microarray Preprocessing QualityControl TwoChannel
MaintainerJ. Toedling <[email protected]>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

Try the Ringo package in your browser

Any scripts or data that you put into this service are public.

Ringo documentation built on May 2, 2018, 4:13 a.m.