Identify regions of ChIP experiments with high signal in the input, that lead to spurious peaks during peak calling. Remove reads aligning to these regions prior to peak calling, for cleaner ChIP analysis.
|Author||Gord Brown <firstname.lastname@example.org>|
|Date of publication||None|
|Maintainer||Gordon Brown <email@example.com>|
calcThreshold-methods: Calculate Read Count Threshold
countReads-methods: Count reads from a 'BamFile'
getKaryotype-methods: Replace the karyotype of a 'GreyList' object
greyList: A sample 'GreyList' object for use in examples.
greyListBS: Construct a grey list with default arguments
GreyList-class: '"GreyList"' Objects
loadKaryotype-methods: Load a karyotype from a file
makeGreyList-methods: Generate a grey list from a 'GreyList' object