GreyListChIP: Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
Version 1.8.0

Identify regions of ChIP experiments with high signal in the input, that lead to spurious peaks during peak calling. Remove reads aligning to these regions prior to peak calling, for cleaner ChIP analysis.

Package details

AuthorGord Brown <gdbzork@gmail.com>
Bioconductor views Alignment ChIPSeq Coverage DifferentialPeakCalling GenomeAnnotation Preprocessing Sequencing
MaintainerGordon Brown <gordon.brown@cruk.cam.ac.uk>
LicenseArtistic-2.0
Version1.8.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GreyListChIP")

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GreyListChIP documentation built on May 31, 2017, 11:41 a.m.