makeGreyList-methods: Generate a grey list from a 'GreyList' object
In GreyListChIP: Grey Lists -- Mask Artefact Regions Based on ChIP Inputs

Create the actual grey list, based on the threshold calculated by calcThreshold and the read counts from countReads.

1	makeGreyList(obj,maxGap=16384)

`obj`	The `GreyList` object to create the list for.
`maxGap`	If the distance between neighbouring grey regions is less than or equal to `maxGap`, the regions will be merged into one big region.

Create the grey list as a GRanges object. Merge grey regions if they are separated by up to maxGap bp.

The modified GreyList, with the regions added.

Gord Brown

# load a pre-built GreyList object:
data(greyList)

# calculate the actual regions:
gl <- makeGreyList(greyList)

GreyListChIP documentation built on Nov. 8, 2020, 5:22 p.m.

GreyListChIP index

Generating Grey Lists from Input Libraries

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

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