Load a karyotype from a file
Load a karyotype from a file, (re)generate the tiling, for a
loadKaryotype(obj, karyoFile, tileSize=1024)
A text file describing a genome's karyotype. The format is one line per chromosome (or contig or whatever), with the name of the chromosome, some white space, and an integer giving the length of the chromosome in nucleotides.
The width of tiles on which to count. Tiles will be placed every tileSize/2 nucleotides, to catch regions of high signal that might otherwise be split across (non-overlapping) tiles and hence missed.
GreyList object with a new genome and
tiling, loaded from the provided file.
1 2 3 4 5 6 7 8 9
Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.