Man pages for GreyListChIP
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs

calcThreshold-methodsCalculate Read Count Threshold
ce10.blacklistA 'GRanges' object representing ENCODE signal artefact or...
countReads-methodsCount reads from a 'BamFile'
dm3.blacklist'GRanges' objects representing ENCODE signal artefact or...
getKaryotype-methodsReplace the karyotype of a 'GreyList' object
grch37.blacklist'GRanges' objects representing ENCODE signal artefact or...
grch38.blacklist'GRanges' objects representing ENCODE signal artefact or...
greyListA sample 'GreyList' object for use in examples.
greyListBSConstruct a grey list with default arguments
GreyList-class'"GreyList"' Objects
hg19.blacklist'GRanges' objects representing ENCODE signal artefact or...
hg38.blacklist'GRanges' objects representing ENCODE signal artefact or...
loadKaryotype-methodsLoad a karyotype from a file
makeGreyList-methodsGenerate a grey list from a 'GreyList' object
mm10.blacklist'GRanges' objects representing ENCODE signal artefact or...
mm9.blacklist'GRanges' objects representing ENCODE signal artefact or...
setRegions-methodsReplace the set of regions of a 'GreyList' object
GreyListChIP documentation built on May 2, 2018, 6:05 p.m.