greyListBS: Construct a grey list with default arguments
In GreyListChIP: Grey Lists -- Mask Artefact Regions Based on ChIP Inputs

Description Usage Arguments Value Author(s) See Also Examples

This function is a convenience function, wrapping several steps of grey list construction into one step. If you are content to accept the package's defaults, and are using a BSgenome object to supply the karyotype, this function might be of use to you.

1	greyListBS(genome, bam)

`genome`	a BSgenome object, for the relevant genome.
`bam`	a BAM file to use for making the grey list.

An object of class GreyList.

Gord Brown

GreyList

# If you want to accept the defaults for everything, you can create the
# GreyList in one step using a BSgenome object:
library(BSgenome.Hsapiens.UCSC.hg19)
path <- system.file("extra", package="GreyListChIP")
## Not run: fn <- file.path(path,"sample_chr21.bam")
## Not run: gl <- greyListBS(BSgenome.Hsapiens.UCSC.hg19,fn)