CopywriteR: Copy number information from targeted sequencing using off-target reads

CopywriteR extracts DNA copy number information from targeted sequencing by utiizing off-target reads. It allows for extracting uniformly distributed copy number information, can be used without reference, and can be applied to sequencing data obtained from various techniques including chromatin immunoprecipitation and target enrichment on small gene panels. Thereby, CopywriteR constitutes a widely applicable alternative to available copy number detection tools.

AuthorThomas Kuilman
Date of publicationNone
MaintainerThomas Kuilman <t.kuilman@nki.nl>
LicenseGPL-2
Version2.6.0
https://github.com/PeeperLab/CopywriteR

View on Bioconductor

Files in this package

CopywriteR/DESCRIPTION
CopywriteR/NAMESPACE
CopywriteR/NEWS
CopywriteR/R
CopywriteR/R/CopywriteR.R CopywriteR/R/plotCNA.R CopywriteR/R/preCopywriteR.R CopywriteR/R/private.R
CopywriteR/build
CopywriteR/build/vignette.rds
CopywriteR/inst
CopywriteR/inst/doc
CopywriteR/inst/doc/CopywriteR.R
CopywriteR/inst/doc/CopywriteR.Rnw
CopywriteR/inst/doc/CopywriteR.pdf
CopywriteR/man
CopywriteR/man/CopywriteR.Rd CopywriteR/man/plotCNA.Rd CopywriteR/man/preCopywriteR.Rd
CopywriteR/vignettes
CopywriteR/vignettes/CopywriteR.Rnw
CopywriteR/vignettes/CopywriteR.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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