CopywriteR: Copy number information from targeted sequencing using off-target reads

CopywriteR extracts DNA copy number information from targeted sequencing by utiizing off-target reads. It allows for extracting uniformly distributed copy number information, can be used without reference, and can be applied to sequencing data obtained from various techniques including chromatin immunoprecipitation and target enrichment on small gene panels. Thereby, CopywriteR constitutes a widely applicable alternative to available copy number detection tools.

Author
Thomas Kuilman
Date of publication
None
Maintainer
Thomas Kuilman <t.kuilman@nki.nl>
License
GPL-2
Version
2.6.0
URLs

View on Bioconductor

Man pages

CopywriteR
CopywriteR: ENhanced COpy number Detection from Exome Reads
plotCNA
CopywriteR: ENhanced COpy number Detection from Exome Reads
preCopywriteR
CopywriteR: DNA copy number detection from off-target...

Files in this package

CopywriteR/DESCRIPTION
CopywriteR/NAMESPACE
CopywriteR/NEWS
CopywriteR/R
CopywriteR/R/CopywriteR.R
CopywriteR/R/plotCNA.R
CopywriteR/R/preCopywriteR.R
CopywriteR/R/private.R
CopywriteR/build
CopywriteR/build/vignette.rds
CopywriteR/inst
CopywriteR/inst/doc
CopywriteR/inst/doc/CopywriteR.R
CopywriteR/inst/doc/CopywriteR.Rnw
CopywriteR/inst/doc/CopywriteR.pdf
CopywriteR/man
CopywriteR/man/CopywriteR.Rd
CopywriteR/man/plotCNA.Rd
CopywriteR/man/preCopywriteR.Rd
CopywriteR/vignettes
CopywriteR/vignettes/CopywriteR.Rnw
CopywriteR/vignettes/CopywriteR.bib