Biocview "TargetedResequencing"

kstreet13/VDJdive

Analysis Tools for 10X V(D)J Data

LymphoSeq

Analyze high-throughput sequencing of T and B cell receptors

davidcoffey/LymphoSeq

Analyze high-throughput sequencing of T and B cell receptors

elulu3/LymphoSeqTest

Analyze high-throughput sequencing of T and B cell receptors

PeeperLab/CopywriteRCustomBed

Copy number information from ChIP_seq using off-target reads off-target reads

CopywriteR

Copy number information from targeted sequencing using off-target reads

PeeperLab/CopywriteR

Copy number information from targeted sequencing using off-target reads

CellaRepertorium

Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)

MDTS

Detection of de novo deletion in targeted sequencing trios

JMF47/DnMD

Detection of de novo deletion in targeted sequencing trios

JMF47/MDTS

Detection of de novo deletion in targeted sequencing trios

PeeperLab/XenofilteR

Excluding host reads from xenograft sequencing data

Clomial

Infers clonal composition of a tumor

NGScopy

NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing

gamerino/TarSeqQC

TARgeted SEQuencing Experiment Quality Control

TarSeqQC

TARgeted SEQuencing Experiment Quality Control

iofeidis/tripr

T-cell Receptor/Immunoglobulin Profiler (TRIP)