AffyRNADegradation: Analyze and correct probe positional bias in microarray data due to RNA degradation

Share:

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Author
Mario Fasold
Date of publication
None
Maintainer
Mario Fasold <fasold@izbi.uni-leipzig.de>
License
GPL-2
Version
1.20.0

View on Bioconductor

Man pages

AffyDegradationBatch-class
Class AffyDegradationBatch
AffyRNADegradation
Compute degradation parameters and correct probe intensities
AffyRNADegradation-package
AffyRNADegradation: analyze and correct RNA degradation...
GetTongs
Generate and visualize the tongs plot

Files in this package

AffyRNADegradation/DESCRIPTION
AffyRNADegradation/NAMESPACE
AffyRNADegradation/NEWS
AffyRNADegradation/R
AffyRNADegradation/R/AffyRNADegradation.R
AffyRNADegradation/R/AllClasses.R
AffyRNADegradation/R/decayFunction.R
AffyRNADegradation/R/probeInfo.R
AffyRNADegradation/R/tongs.R
AffyRNADegradation/build
AffyRNADegradation/build/vignette.rds
AffyRNADegradation/inst
AffyRNADegradation/inst/CITATION
AffyRNADegradation/inst/doc
AffyRNADegradation/inst/doc/vignette.R
AffyRNADegradation/inst/doc/vignette.Rnw
AffyRNADegradation/inst/doc/vignette.pdf
AffyRNADegradation/man
AffyRNADegradation/man/AffyDegradationBatch-class.Rd
AffyRNADegradation/man/AffyRNADegradation-package.Rd
AffyRNADegradation/man/AffyRNADegradation.Rd
AffyRNADegradation/man/GetTongs.Rd
AffyRNADegradation/vignettes
AffyRNADegradation/vignettes/AffyRNADegradation.bib
AffyRNADegradation/vignettes/vignette.Rnw