AffyRNADegradation: Analyze and correct probe positional bias in microarray data due to RNA degradation

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("AffyRNADegradation")
AuthorMario Fasold
Bioconductor views GeneExpression Microarray OneChannel Preprocessing QualityControl
Date of publicationNone
MaintainerMario Fasold <fasold@izbi.uni-leipzig.de>
LicenseGPL-2
Version1.20.0

View on Bioconductor

Functions

afbatch Man page
afbatch,AffyDegradationBatch-method Man page
AffyDegradationBatch Man page
AffyDegradationBatch,ANY Man page
AffyDegradationBatch-class Man page
AffyRNADegradation Man page
AffyRNADegradation-package Man page
d Man page
d,AffyDegradationBatch-method Man page
GetTongs Man page
PlotDegradationHooks Man page
plotDx Man page
plotDx,AffyDegradationBatch-method Man page
PlotTongs Man page
RNADegradation Man page

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/AffyRNADegradation.R R/AllClasses.R R/decayFunction.R R/probeInfo.R R/tongs.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/vignette.R
inst/doc/vignette.Rnw
inst/doc/vignette.pdf
man
man/AffyDegradationBatch-class.Rd man/AffyRNADegradation-package.Rd man/AffyRNADegradation.Rd man/GetTongs.Rd
vignettes
vignettes/AffyRNADegradation.bib
vignettes/vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.