AffyRNADegradation: Analyze and correct probe positional bias in microarray data due to RNA degradation

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

AuthorMario Fasold
Date of publicationNone
MaintainerMario Fasold <fasold@izbi.uni-leipzig.de>
LicenseGPL-2
Version1.20.0

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Files in this package

AffyRNADegradation/DESCRIPTION
AffyRNADegradation/NAMESPACE
AffyRNADegradation/NEWS
AffyRNADegradation/R
AffyRNADegradation/R/AffyRNADegradation.R AffyRNADegradation/R/AllClasses.R AffyRNADegradation/R/decayFunction.R AffyRNADegradation/R/probeInfo.R AffyRNADegradation/R/tongs.R
AffyRNADegradation/build
AffyRNADegradation/build/vignette.rds
AffyRNADegradation/inst
AffyRNADegradation/inst/CITATION
AffyRNADegradation/inst/doc
AffyRNADegradation/inst/doc/vignette.R
AffyRNADegradation/inst/doc/vignette.Rnw
AffyRNADegradation/inst/doc/vignette.pdf
AffyRNADegradation/man
AffyRNADegradation/man/AffyDegradationBatch-class.Rd AffyRNADegradation/man/AffyRNADegradation-package.Rd AffyRNADegradation/man/AffyRNADegradation.Rd AffyRNADegradation/man/GetTongs.Rd
AffyRNADegradation/vignettes
AffyRNADegradation/vignettes/AffyRNADegradation.bib
AffyRNADegradation/vignettes/vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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