MELON: Methylation Enriched LOci Normalization (MELON) for genome-wide DNA methylation experiments
Version 0.1.1

Methylation Enriched LOci Normalization (MELON) for genome-wide DNA methylation experiments

Browse man pages Browse package API and functions Browse package files

AuthorTim De Meyer <Tim.DeMeyer@Ugent.be>
Bioconductor views Bioinformatics Methylation Normalization Preprocessing
Date of publicationNone
MaintainerPeter Pipelers <Peter.Pipelers@UGent.be>
LicenseLGPL version 2 or newer
Version0.1.1
URL http://r-forge.r-project.org/projects/melon/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MELON", repos="http://R-Forge.R-project.org")

Man pages

getDataStabLoci: Extracts data of stable loci from 'MELON' object
getIdStabLoci: Extracts the indices of the considered stable loci in the...
getNormData: Extracts normalized data from 'MELON' object
getNormFactors: Extracts normalization factors from 'MELON' object
getRefId: Returns the used reference sample in a normalized 'MELON'...
getStabFeatures: Extracts the stability results from 'MELON' object
makeMELON: Normalize data from DNA methylation experiments according to...
MELON-class: Class "MELON"
normScatterPlot: Create MELON scatter plots

Functions

MELON-class Man page
getDataStabLoci Man page
getDataStabLoci,MELON-method Man page
getIdStabLoci Man page
getIdStabLoci,MELON-method Man page
getNormData Man page
getNormData,MELON-method Man page
getNormFactors Man page
getNormFactors,MELON-method Man page
getRefId Man page
getRefId,MELON-method Man page
getStabFeatures Man page
getStabFeatures,MELON-method Man page
initialize,MELON-method Man page
makeMELON Man page Source code
normScatterPlot Man page
normScatterPlot,MELON-method Man page
show,MELON-method Man page

Files

R
R/AllClasses.R
R/MELON.R
R/makeMELON.R
R/AllGenerics.R
R/show-methods.R
R/methods-MELON.R
R/MELON-accessors.R
NAMESPACE
inst
inst/NEWS.Rd
DESCRIPTION
man
man/getStabFeatures.Rd
man/getRefId.Rd
man/makeMELON.Rd
man/getNormData.Rd
man/getNormFactors.Rd
man/getDataStabLoci.Rd
man/MELON-class.Rd
man/getIdStabLoci.Rd
man/normScatterPlot.Rd
MELON documentation built on May 21, 2017, 3:53 a.m.