Biocview "Bioinformatics"

A Genetic-Based Assay for the Identification of Cell Lines

An algorithm for gene and gene set network inference

Analysis and quantitation of isobarically tagged MSMS proteomics data

Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

Analysis of Ontologies and Protein Domain Annotations

a tool set for pathway based data integration and visualization

BraDiPluS - Braille Display Plugs Data Analysis

ccrepe_and_nc.score

Comparison between multiple levels of gene expression

Connect high throughput Array data from different platforms

Control IGB From R

Cross-target analysis of small molecule bioactivity

Detecting Differentially Variable Genes Using the Mixture of Marginal Distributions

Detecting Gene Probes with Different Means or Variances Between Two Groups

Differential Coverage package

(Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies

Exploring Genomic Relations for Enhanced Interpretation Through Enrichment, Similarity, Network and Annotation Analysis

expression density diagnostics

Gaussian Process Ranking and Estimation of Gene Expression time-series

Generalized Intersection-Union Tests

Gene Set Distance Analysis (GSDA)

High throughput prioritized acquisition and processing of tandem mass spectra

Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology

Integrative clustering of multiple genomic data types

Linear Models for Microarray Data

Maaslin

Methods for Continuous Flow Cytometry

Methylation Enriched LOci Normalization (MELON) for genome-wide DNA methylation experiments

Model-Based Gene Clustering for Genomics Data from Paired/Matched Designs

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Networking Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level

ODE add-on to CellNOptR

Probabilistic combinatorial nested effects model

Protein co-expression network analysis (ProCoNA).

Revealing differentially expressed genes using nonlinear dimensionality reduction for single cell RNA-Seq data

R interface to the pepXML standard

Sequential Flow Cytometry Data Gating

Similarity measures for chemical compounds

Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

Tools for conducting enrichment analysis of MeSH

Transform Counts in RNA-Seq Data Analysis

Workflow to process tandem MS files and build MassBank records