iCluster: Integrative clustering of multiple genomic data types

Integrative clustering of multiple genomic data types using a joint latent variable model.

Author
Ronglai Shen
Date of publication
2012-05-08 04:07:00
Maintainer
Ronglai Shen <shenr@mskcc.org>
License
GPL (>= 2)
Version
2.1.0

View on CRAN

Man pages

breast.chr17
Breast cancer data set DNA copy number and mRNA expression...
compute.pod
A function to compute the proportion of deviation from...
coord
genomic coordinates
gbm
GBM data
glp
good lattice points using the uniform design
iCluster
Integrative clustering of multiple genomic data types
iCluster2
A variant of the iCluster method with variance weighted...
plotHeatmap
A function to generate heatmap panels sorted by integrated...
plotiCluster
A function to generate cluster separability matrix plot.
plotRI
A function to generate reproducibility index plot.
simu.datasets
simulated dataset.
tuneiCluster2
Model tuning function

Files in this package

iCluster
iCluster/MD5
iCluster/DESCRIPTION
iCluster/data
iCluster/data/gbm.rda
iCluster/data/coord.rda
iCluster/data/glp.rda
iCluster/data/breast.chr17.rda
iCluster/data/datalist
iCluster/data/simu.datasets.rda
iCluster/NAMESPACE
iCluster/demo
iCluster/demo/00Index
iCluster/demo/iCluster.demo.R
iCluster/man
iCluster/man/breast.chr17.Rd
iCluster/man/plotRI.Rd
iCluster/man/coord.Rd
iCluster/man/tuneiCluster2.Rd
iCluster/man/plotHeatmap.Rd
iCluster/man/iCluster2.Rd
iCluster/man/glp.Rd
iCluster/man/gbm.Rd
iCluster/man/compute.pod.Rd
iCluster/man/iCluster.Rd
iCluster/man/simu.datasets.Rd
iCluster/man/plotiCluster.Rd
iCluster/R
iCluster/R/tune.iCluster2.R
iCluster/R/iCluster.R
iCluster/R/plotiCluster.R
iCluster/R/plotHeatmap.R
iCluster/R/plotRI.R
iCluster/R/iCluster2.R
iCluster/R/computePOD.R