plotRI: A function to generate reproducibility index plot.
In iCluster: Integrative clustering of multiple genomic data types

Description Usage Arguments Value Author(s) References See Also Examples

A function to generate reproducibility index plot.

1	plotRI(cv.fit)

cv.fit

A tune.iCluster2 object

no value returned.

Ronglai Shen shenr@mskcc.org

Ronglai Shen, Adam Olshen, Marc Ladanyi. (2009). Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25, 2906-2912.

Ronglai Shen, Qianxing Mo, Nikolaus Schultz, Venkatraman E. Seshan, Adam B. Olshen, Jason Huse, Marc Ladanyi, Chris Sander. (2012). Integrative Subtype Discovery in Glioblastoma Using iCluster. PLoS ONE 7, e35236

tune.iCluster2

#data(simu.datasets)
#cv.fit=alist()
#for(k in 2:5){
#  cat(paste("K=",k,sep=""),'\n')
#  cv.fit[[k]]=tune.iCluster2(datasets=simu.datasets, k,nrep=2, n.lambda=8)
#}

##Reproducibility index (RI) plot
#plotRI(cv.fit)