plotRI: A function to generate reproducibility index plot.

Description Usage Arguments Value Author(s) References See Also Examples

Description

A function to generate reproducibility index plot.

Usage

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plotRI(cv.fit)

Arguments

cv.fit

A tune.iCluster2 object

Value

no value returned.

Author(s)

Ronglai Shen shenr@mskcc.org

References

Ronglai Shen, Adam Olshen, Marc Ladanyi. (2009). Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25, 2906-2912.

Ronglai Shen, Qianxing Mo, Nikolaus Schultz, Venkatraman E. Seshan, Adam B. Olshen, Jason Huse, Marc Ladanyi, Chris Sander. (2012). Integrative Subtype Discovery in Glioblastoma Using iCluster. PLoS ONE 7, e35236

See Also

tune.iCluster2

Examples

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#data(simu.datasets)
#cv.fit=alist()
#for(k in 2:5){
#  cat(paste("K=",k,sep=""),'\n')
#  cv.fit[[k]]=tune.iCluster2(datasets=simu.datasets, k,nrep=2, n.lambda=8)
#}

##Reproducibility index (RI) plot
#plotRI(cv.fit)

iCluster documentation built on May 2, 2019, 11:25 a.m.

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