A function to generate cluster separability matrix plot.
A iCluster object
no value returned.
Ronglai Shen email@example.com
Ronglai Shen, Adam Olshen, Marc Ladanyi. (2009). Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25, 2906-2912.
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# library(iCluster) # data(breast.chr17) # fit=iCluster(datasets=breast.chr17, k=4, lambda=c(0.2,0.2)) # plotiCluster(fit=fit, label=rownames(breast.chr17[])) # compute.pod(fit)
Loading required package: lattice Loading required package: caTools Loading required package: gdata sh: 1: cannot create /dev/null: Permission denied gdata: Unable to locate valid perl interpreter gdata: gdata: read.xls() will be unable to read Excel XLS and XLSX files gdata: unless the 'perl=' argument is used to specify the location of a gdata: valid perl intrpreter. gdata: gdata: (To avoid display of this message in the future, please ensure gdata: perl is installed and available on the executable search path.) sh: 1: cannot create /dev/null: Permission denied gdata: Unable to load perl libaries needed by read.xls() gdata: to support 'XLX' (Excel 97-2004) files. gdata: Unable to load perl libaries needed by read.xls() gdata: to support 'XLSX' (Excel 2007+) files. gdata: Run the function 'installXLSXsupport()' gdata: to automatically download and install the perl gdata: libaries needed to support Excel XLS and XLSX formats. Attaching package: 'gdata' The following object is masked from 'package:stats': nobs The following object is masked from 'package:utils': object.size The following object is masked from 'package:base': startsWith Loading required package: gtools Loading required package: gplots Attaching package: 'gplots' The following object is masked from 'package:stats': lowess Loading required package: parallel
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