edd: expression density diagnostics
Version 1.34.0

tools for evaluating cohort distributions of gene expression levels

AuthorVince Carey <stvjc@channing.harvard.edu>
Bioconductor views Bioinformatics DifferentialExpression
Date of publicationNone
MaintainerVince Carey <stvjc@channing.harvard.edu>
LicenseLGPL
Version1.34.0
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("edd", repos="http://R-Forge.R-project.org")

Popular man pages

centerScale: center and scale a vector to zero median, unit mad
edd: new expression density diagnostics interface
flatQQNorm: QQ difference plot
latEDtable: use latex tags for dimnames of table created from edd...
makeCandmat.raw: create and store reference distributions for edd
maxKSp: classify densities by maximum KS p-value
plotED: visualize an eddDist object
See all...

All man pages Function index File listing

Man pages

centerScale: center and scale a vector to zero median, unit mad
edd: new expression density diagnostics interface
eddDist-class: Class "eddDist"
eddObsolete: Expression Density Diagnostics
flatQQNorm: QQ difference plot
latEDtable: use latex tags for dimnames of table created from edd...
makeCandmat.raw: create and store reference distributions for edd
maxKSp: classify densities by maximum KS p-value
plotED: visualize an eddDist object

Functions

B28 Man page
B82 Man page
CDFname Man page
CDFname,eddDist-method Man page
CS1 Man page
LN01 Man page
MIXN1 Man page
MIXN2 Man page
Mad Man page
Mad,eddDist-method Man page
N01 Man page
T3 Man page
U01 Man page
centerScale Man page Source code
ctr Man page
dmix1n Man page
dmix2n Man page
dmixnorm Man page Source code
edd Man page Source code
eddDist-class Man page
eddDistList Man page
eddObsolete Man page Source code
flatQQNorm Man page
flatQQNormY Man page
fq.matrows Man page
genName Man page
genName,eddDist-method Man page
latEDtable Man page Source code
latexTag Man page
latexTag,eddDist-method Man page
makeCandmat.raw Man page Source code
makeCandmat.theor Man page Source code
maxKSp Man page Source code
med Man page
med,eddDist-method Man page
mkt Man page Source code
parms Man page
parms,eddDist-method Man page
plotED Man page Source code
plotlim Man page
plotlim,eddDist-method Man page
pmix1n Man page
pmix2n Man page
pmixnorm Man page Source code Source code
qfName Man page
qfName,eddDist-method Man page
qfun Man page
qfun,eddDist-method Man page
qmix1n Man page
qmix2n Man page
qmixnorm Man page Source code
rmixnorm Man page Source code
rmixnorm.alt Man page Source code
s.rmix1norm Man page
s.rmix2norm Man page
stub Man page
stub,eddDist-method Man page
tag Man page
tag,eddDist-method Man page
testVec Man page
testVec,eddDist-method Man page
testVec,numeric,eddDist,logical-method Man page
testcl Man page

Files

R
R/latEDtable.R
R/edd.R
R/plotED.R
NAMESPACE
inst
inst/doc
inst/doc/eddDetails.pdf
inst/doc/HOWTO-edd.pdf
inst/doc/eddDetails.Rnw
inst/doc/HOWTO-edd.Rnw
inst/COPYING
DESCRIPTION
man
man/maxKSp.Rd
man/edd.Rd
man/plotED.Rd
man/latEDtable.Rd
man/eddObsolete.Rd
man/eddDist-class.Rd
man/centerScale.Rd
man/flatQQNorm.Rd
man/makeCandmat.raw.Rd
edd documentation built on May 21, 2017, 3:41 a.m.