edd: expression density diagnostics

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tools for evaluating cohort distributions of gene expression levels

Author
Vince Carey <stvjc@channing.harvard.edu>
Date of publication
None
Maintainer
Vince Carey <stvjc@channing.harvard.edu>
License
LGPL
Version
1.34.0

View on R-Forge

Man pages

centerScale
center and scale a vector to zero median, unit mad
edd
new expression density diagnostics interface
eddDist-class
Class "eddDist"
eddObsolete
Expression Density Diagnostics
flatQQNorm
QQ difference plot
latEDtable
use latex tags for dimnames of table created from edd...
makeCandmat.raw
create and store reference distributions for edd
maxKSp
classify densities by maximum KS p-value
plotED
visualize an eddDist object

Files in this package

edd
edd/R
edd/R/latEDtable.R
edd/R/edd.R
edd/R/plotED.R
edd/NAMESPACE
edd/inst
edd/inst/doc
edd/inst/doc/eddDetails.pdf
edd/inst/doc/HOWTO-edd.pdf
edd/inst/doc/eddDetails.Rnw
edd/inst/doc/HOWTO-edd.Rnw
edd/inst/COPYING
edd/DESCRIPTION
edd/man
edd/man/maxKSp.Rd
edd/man/edd.Rd
edd/man/plotED.Rd
edd/man/latEDtable.Rd
edd/man/eddObsolete.Rd
edd/man/eddDist-class.Rd
edd/man/centerScale.Rd
edd/man/flatQQNorm.Rd
edd/man/makeCandmat.raw.Rd