latEDtable: use latex tags for dimnames of table created from edd...
In edd: expression density diagnostics

Description Usage Arguments Details Value Author(s) Examples

View source: R/latEDtable.R

use latex tags for dimnames of table created from edd classification

1	latEDtable(x, baselist=eddDistList, reorder=NULL)

`x`	x – a table (possibly two dimensional) of results of applying edd
`baselist`	baselist – a list of eddDist objects
`reorder`	reorder – a numeric vector describing how to re order the table rows/columns

for use with xtable rendering. table will give results with margin names in lexicographic order; reorder can be used to get a different order.

a matrix with dimnames computed from the latexTag slots of the corresponding eddDist objects

Vince Carey <stvjc@channing.harvard.edu>

require(Biobase)
data(sample.ExpressionSet)
# should filter to genes with reasonable variation
rawTab <- table( edd(sample.ExpressionSet, meth="nnet", size=10, decay=.2) )
latEDtable(rawTab)
library(xtable)
xtable(latEDtable(rawTab))
#
realTags <- sapply(eddDistList,tag)
reo <- match(realTags,names(rawTab))
xtable(latEDtable(rawTab,reorder=reo))