sneumann/MetShot: High throughput prioritized acquisition and processing of tandem mass spectra

MetShot will provides functions to schedule the high-throughput acquisition of targeted tandem mass spectrometry. Targets can be prioritized by biological relevance, e.g. determined by XCMS's diffreports, or user-provided priority lists. Supported target formats for instrument control are the PSI traML, Bruker micrOTOF control methods and Agilent something. After the measurements, MetShot uses CAMERA functions to create tandem mass peak list, to avoid background signals. Finally, MetShot can create batch query files for identification against MassBank or MetFrag.

Getting started

Package details

AuthorSteffen Neumann <>
Bioconductor views Bioinformatics DataImport Infrastructure MassSpectrometry Metabolomics Proteomics
MaintainerSteffen Neumann <>, Andrea Thum <>
LicenseGPL (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
sneumann/MetShot documentation built on May 30, 2019, 5:05 a.m.