traML: Creating traML files from pickLists

In sneumann/MetShot: High throughput prioritized acquisition and processing of tandem mass spectra

Description

Create traML objects, and add segments describing the parameters for tandem MS spectra.

Usage

beginTraml()

addTargetSegment(traml, MSmode = c("positive", "negative"), MSMSManual_ListCollisionEnergy = 15, MSMSManual_ListIsolationWidth = 8)

endTraml(traml)

Arguments

traml	An traML XML document
MSmode	Polarity of the requested tandem MS segment
MSMSManual_ListCollisionEnergy	Specify the collision energy to use
MSMSManual_ListIsolationWidth	Specify the isolation width to use

Details

Currently will add a predefined segment.

Value

Return an XML document with a new segment

Author(s)

Steffen Neumann

References

http://www.psidev.info/index.php?q=node/405

See Also

beginTraml, endTraml, picklist2traml

Examples

traml <- NULL
traml <- beginTraml()
traml <- addTargetSegment(traml)
traml <- endTraml(traml)

sneumann/MetShot documentation built on May 30, 2019, 5:05 a.m.