flowDensity: Sequential Flow Cytometry Data Gating

Share:

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author
M. Jafar Taghiyar, Mehrnoush Malek
Date of publication
None
Maintainer
Mehrnoush Malek <mmalekes@bccrc.ca>
License
Artistic-2.0
Version
1.8.0

View on Bioconductor

Man pages

CellPopulation-class
Class '"CellPopulation"'
deGate
1D density gating method
flowDensity
Automated Sequential Gating Tool for Flow Cytometry
flowDensity-methods
Methods for Function 'flowDensity' in Package 'flowDensity'
getflowFrame
'CellPopulation' class accessor.
nmRemove
Preprocessing helper function for flow cytometry data
notSubFrame
Removing a subset of a FlowFrame object
plotDens
Plot flow cytometry data with density-based colors

Files in this package

flowDensity/DESCRIPTION
flowDensity/NAMESPACE
flowDensity/R
flowDensity/R/AllClasses.R
flowDensity/R/AllGenerics.R
flowDensity/R/flowDensity_methods.R
flowDensity/R/helper_functions.R
flowDensity/R/openCyto_wrappers.R
flowDensity/README
flowDensity/build
flowDensity/build/vignette.rds
flowDensity/inst
flowDensity/inst/NEWS
flowDensity/inst/doc
flowDensity/inst/doc/flowDensityVignette.R
flowDensity/inst/doc/flowDensityVignette.Rnw
flowDensity/inst/doc/flowDensityVignette.pdf
flowDensity/inst/extdata
flowDensity/inst/extdata/sampleFCS_1.Rdata
flowDensity/inst/extdata/sampleFCS_2.Rdata
flowDensity/inst/extdata/sampleFCS_3.Rdata
flowDensity/inst/extdata/sampleFCS_3_FMO.Rdata
flowDensity/man
flowDensity/man/CellPopulation-class.Rd
flowDensity/man/deGate.Rd
flowDensity/man/flowDensity-methods.Rd
flowDensity/man/flowDensity.Rd
flowDensity/man/getflowFrame.Rd
flowDensity/man/nmRemove.Rd
flowDensity/man/notSubFrame.Rd
flowDensity/man/plotDens.Rd
flowDensity/vignettes
flowDensity/vignettes/flowDensityVignette.Rnw