flowDensity: Sequential Flow Cytometry Data Gating

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("flowDensity")
AuthorM. Jafar Taghiyar, Mehrnoush Malek
Bioconductor views Bioinformatics Cancer CellBiology Clustering DensityGating FlowCytData FlowCytometry StemCells
Date of publicationNone
MaintainerMehrnoush Malek <mmalekes@bccrc.ca>
LicenseArtistic-2.0
Version1.10.0

View on Bioconductor

Functions

CellPopulation-class Man page
deGate Man page
flowDensity Man page
.flowDensity Man page
flowDensity,CellPopulation,ANY,logical,missing-method Man page
flowDensity,CellPopulation,missing,missing,logical-method Man page
flowDensity,flowFrame,ANY,logical,missing-method Man page
flowDensity-methods Man page
getflowFrame Man page
getflowFrame, CellPopulation-method Man page
getflowFrame,CellPopulation-method Man page
nmRemove Man page
notSubFrame Man page
plotDens Man page
plot, flowFrame, CellPopulation-method Man page
plot,flowFrame,CellPopulation-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/AllGenerics.R R/flowDensity_methods.R R/helper_functions.R R/openCyto_wrappers.R
README
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/flowDensityVignette.R
inst/doc/flowDensityVignette.Rnw
inst/doc/flowDensityVignette.pdf
inst/extdata
inst/extdata/sampleFCS_1.Rdata
inst/extdata/sampleFCS_2.Rdata
inst/extdata/sampleFCS_3.Rdata
inst/extdata/sampleFCS_3_FMO.Rdata
man
man/CellPopulation-class.Rd man/deGate.Rd man/flowDensity-methods.Rd man/flowDensity.Rd man/getflowFrame.Rd man/nmRemove.Rd man/notSubFrame.Rd man/plotDens.Rd
vignettes
vignettes/flowDensityVignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.