Class "CellPopulation"

Share:

Description

This class represents the output of 'flowDensity(.)' function from flowDensity package.

Objects from the Class

Objects can be created by calls of the form new("CellPopulation", ...).

Slots

flow.frame:

Object of class "flowFrame" representing the flow cytometry data of the cell population

proportion:

Object of class "numeric" representing proportion of the cell population with respect to its parent cell population

cell.count:

Object of class "numeric" representing cell count of the cell population

channels:

Object of class "character" representing channel names corresponding to the 2 dimensions where the cell population is extracted

position:

Object of class "logical" representing position of the cell population in the 2-dimensional space

gates:

Object of class "numeric" representing thresholds on each channel used to gate the cell population

filter:

Object of class "matrix" representing boundary of the cell population using a convex polygon

index:

Object of class "numeric" representing indices of the data points in the cell population with respect to its parent cell population

Methods

flowDensity

signature(obj = "CellPopulation", channels = "ANY", position = "logical", singlet.gate = "missing"): ...

flowDensity

signature(obj = "CellPopulation", channels = "missing", position = "missing", singlet.gate = "logical"): ...

getflowFrame

signature(obj = "CellPopulation"): ...

plot

signature(x = "flowFrame", y = "CellPopulation"): ...

Author(s)

Jafar Taghiyar <email: <jtaghiyar@bccrc.ca>>

Examples

1
showClass("CellPopulation")