meshr: Tools for conducting enrichment analysis of MeSH

A set of annotation maps describing the entire MeSH assembled using data from MeSH

Author
Itoshi Nikaido, Koki Tsuyuzaki, Gota Morota
Date of publication
None
Maintainer
Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
License
Artistic-2.0
Version
1.10.0

View on Bioconductor

Man pages

category
A function to return the name of MeSH category
database
A function to return the name of MeSH database
geneid.cummeRbund
Test data of significant differentially expressed genes used...
MeSHHyperGParams-class
Class "MeSHHyperGParams"
MeSHHyperGResult-class
Class "MeSHHyperGResult"
meshHyperGTest
Hypergeometric Tests for MeSH term association
meshr-package
Enrichment analysis for MeSH terms.
PMCID
PUBMEDID - PMCID correspondence
sig.geneid.cummeRbund
Test data of significant differentially expressed genes used...

Files in this package

meshr/DESCRIPTION
meshr/NAMESPACE
meshr/R
meshr/R/AllClasses.R
meshr/R/AllGenerics.R
meshr/R/MeSHHyperGParams-accessors.R
meshr/R/MeSHHyperGResult-accessors.R
meshr/R/initialize-methods.R
meshr/R/meshHyperGTest-methods.R
meshr/build
meshr/build/vignette.rds
meshr/data
meshr/data/PMCID.rda
meshr/data/datalist
meshr/data/geneid.cummeRbund.rda
meshr/data/sig.geneid.cummeRbund.rda
meshr/inst
meshr/inst/CITATION
meshr/inst/NEWS
meshr/inst/doc
meshr/inst/doc/MeSH.R
meshr/inst/doc/MeSH.Rnw
meshr/inst/doc/MeSH.pdf
meshr/inst/doc/MeSH.tex
meshr/inst/doc/fig1.png
meshr/inst/doc/fig2.png
meshr/inst/doc/fig3.png
meshr/inst/doc/fig4.png
meshr/man
meshr/man/MeSHHyperGParams-class.Rd
meshr/man/MeSHHyperGResult-class.Rd
meshr/man/PMCID.Rd
meshr/man/category.Rd
meshr/man/database.Rd
meshr/man/geneid.cummeRbund.Rd
meshr/man/meshHyperGTest.Rd
meshr/man/meshr-package.Rd
meshr/man/sig.geneid.cummeRbund.Rd
meshr/vignettes
meshr/vignettes/MeSH.Rnw
meshr/vignettes/fig1.png
meshr/vignettes/fig2.png
meshr/vignettes/fig3.png
meshr/vignettes/fig4.png