meshr: Tools for conducting enrichment analysis of MeSH

A set of annotation maps describing the entire MeSH assembled using data from MeSH

AuthorItoshi Nikaido, Koki Tsuyuzaki, Gota Morota
Date of publicationNone
MaintainerKoki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
LicenseArtistic-2.0
Version1.10.0

View on Bioconductor

Functions

annotation<-,MeSHHyperGParams,character-method Man page
annotation,MeSHHyperGParams-method Man page
category Man page
category<- Man page
category<-,MeSHHyperGParams,character-method Man page
category,MeSHHyperGParams-method Man page
database Man page
database<- Man page
database<-,MeSHHyperGParams,character-method Man page
database,MeSHHyperGParams-method Man page
geneid.cummeRbund Man page
geneIds<-,MeSHHyperGParams,ANY-method Man page
geneIds<-,MeSHHyperGParams,logical-method Man page
geneIds,MeSHHyperGParams-method Man page
generic,category Man page
generic,database Man page
initialize,MeSHHyperGParams-method Man page
makeValidParams,MeSHHyperGParams-method Man page
meshAnnotation Man page
meshAnnotation,MeSHHyperGResult-method Man page
meshCategory Man page
meshCategory,MeSHHyperGResult-method Man page
meshDatabase Man page
meshDatabase,MeSHHyperGResult-method Man page
MeSHHyperGParams-class Man page
MeSHHyperGResult-class Man page
meshHyperGTest Man page
meshHyperGTest,MeSHHyperGParams-method Man page
meshIds Man page
meshIds,MeSHHyperGResult-method Man page
meshr Man page
meshr-package Man page
meshTerms Man page
meshTerms,MeSHHyperGResult-method Man page
pAdjust Man page
pAdjust<- Man page
pAdjust<-,MeSHHyperGParams,character-method Man page
pAdjust,MeSHHyperGParams-method Man page
PMCID Man page
pvalueCutoff<-,MeSHHyperGParams-method Man page
pvalueCutoff,MeSHHyperGParams-method Man page
pvalues Man page
pvalues,MeSHHyperGResult-method Man page
save.pdf Man page
save.pdf,MeSHHyperGResult-method Man page
show Man page
show,MeSHHyperGResult-method Man page
sig.geneid.cummeRbund Man page
summary Man page
summary,MeSHHyperGResult-method Man page
universeGeneIds Man page
universeGeneIds<- Man page
universeGeneIds<-,MeSHHyperGParams,ANY-method Man page
universeGeneIds<-,MeSHHyperGParams,logical-method Man page
universeGeneIds<-,MeSHHyperGParams-method Man page
universeGeneIds,MeSHHyperGParams-method Man page

Files

meshr/DESCRIPTION
meshr/NAMESPACE
meshr/R
meshr/R/AllClasses.R meshr/R/AllGenerics.R meshr/R/MeSHHyperGParams-accessors.R meshr/R/MeSHHyperGResult-accessors.R meshr/R/initialize-methods.R meshr/R/meshHyperGTest-methods.R
meshr/build
meshr/build/vignette.rds
meshr/data
meshr/data/PMCID.rda
meshr/data/datalist
meshr/data/geneid.cummeRbund.rda
meshr/data/sig.geneid.cummeRbund.rda
meshr/inst
meshr/inst/CITATION
meshr/inst/NEWS
meshr/inst/doc
meshr/inst/doc/MeSH.R
meshr/inst/doc/MeSH.Rnw
meshr/inst/doc/MeSH.pdf
meshr/inst/doc/MeSH.tex
meshr/inst/doc/fig1.png
meshr/inst/doc/fig2.png
meshr/inst/doc/fig3.png
meshr/inst/doc/fig4.png
meshr/man
meshr/man/MeSHHyperGParams-class.Rd meshr/man/MeSHHyperGResult-class.Rd meshr/man/PMCID.Rd meshr/man/category.Rd meshr/man/database.Rd meshr/man/geneid.cummeRbund.Rd meshr/man/meshHyperGTest.Rd meshr/man/meshr-package.Rd meshr/man/sig.geneid.cummeRbund.Rd
meshr/vignettes
meshr/vignettes/MeSH.Rnw
meshr/vignettes/fig1.png
meshr/vignettes/fig2.png
meshr/vignettes/fig3.png
meshr/vignettes/fig4.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.