meshr: Tools for conducting enrichment analysis of MeSH

A set of annotation maps describing the entire MeSH assembled using data from MeSH

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("meshr")
AuthorItoshi Nikaido, Koki Tsuyuzaki, Gota Morota
Bioconductor views Annotation AnnotationData Bioinformatics FunctionalAnnotation MeSHDb MultipleComparisons Statistics
Date of publicationNone
MaintainerKoki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
LicenseArtistic-2.0
Version1.12.0

View on Bioconductor

Functions

annotation<-,MeSHHyperGParams,character-method Man page
annotation,MeSHHyperGParams-method Man page
category Man page
category<- Man page
category<-,MeSHHyperGParams,character-method Man page
category,MeSHHyperGParams-method Man page
database Man page
database<- Man page
database<-,MeSHHyperGParams,character-method Man page
database,MeSHHyperGParams-method Man page
geneid.cummeRbund Man page
geneIds<-,MeSHHyperGParams,ANY-method Man page
geneIds<-,MeSHHyperGParams,logical-method Man page
geneIds,MeSHHyperGParams-method Man page
generic,category Man page
generic,database Man page
initialize,MeSHHyperGParams-method Man page
makeValidParams,MeSHHyperGParams-method Man page
meshAnnotation Man page
meshAnnotation,MeSHHyperGResult-method Man page
meshCategory Man page
meshCategory,MeSHHyperGResult-method Man page
meshDatabase Man page
meshDatabase,MeSHHyperGResult-method Man page
MeSHHyperGParams-class Man page
MeSHHyperGResult-class Man page
meshHyperGTest Man page
meshHyperGTest,MeSHHyperGParams-method Man page
meshIds Man page
meshIds,MeSHHyperGResult-method Man page
meshr Man page
meshr-package Man page
meshTerms Man page
meshTerms,MeSHHyperGResult-method Man page
pAdjust Man page
pAdjust<- Man page
pAdjust<-,MeSHHyperGParams,character-method Man page
pAdjust,MeSHHyperGParams-method Man page
PMCID Man page
pvalueCutoff<-,MeSHHyperGParams-method Man page
pvalueCutoff,MeSHHyperGParams-method Man page
pvalues Man page
pvalues,MeSHHyperGResult-method Man page
save.pdf Man page
save.pdf,MeSHHyperGResult-method Man page
show Man page
show,MeSHHyperGResult-method Man page
sig.geneid.cummeRbund Man page
summary Man page
summary,MeSHHyperGResult-method Man page
universeGeneIds Man page
universeGeneIds<- Man page
universeGeneIds<-,MeSHHyperGParams,ANY-method Man page
universeGeneIds<-,MeSHHyperGParams,logical-method Man page
universeGeneIds<-,MeSHHyperGParams-method Man page
universeGeneIds,MeSHHyperGParams-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/AllGenerics.R R/MeSHHyperGParams-accessors.R R/MeSHHyperGResult-accessors.R R/initialize-methods.R R/meshHyperGTest-methods.R
build
build/vignette.rds
data
data/PMCID.rda
data/datalist
data/geneid.cummeRbund.rda
data/sig.geneid.cummeRbund.rda
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/MeSH.R
inst/doc/MeSH.Rnw
inst/doc/MeSH.pdf
inst/doc/MeSH.tex
inst/doc/fig1.png
inst/doc/fig2.png
inst/doc/fig3.png
inst/doc/fig4.png
man
man/MeSHHyperGParams-class.Rd man/MeSHHyperGResult-class.Rd man/PMCID.Rd man/category.Rd man/database.Rd man/geneid.cummeRbund.Rd man/meshHyperGTest.Rd man/meshr-package.Rd man/sig.geneid.cummeRbund.Rd
vignettes
vignettes/MeSH.Rnw
vignettes/fig1.png
vignettes/fig2.png
vignettes/fig3.png
vignettes/fig4.png
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All documentation is copyright its authors; we didn't write any of that.