meshr-package: Enrichment analysis for MeSH terms.

In meshr: Tools for conducting enrichment analysis of MeSH

Description

meshr package conducts a MeSH enrichment analysis employing gene-MeSH annotation data. A hypergeometric test accounting for a multiple tesing correction is used to find significantly enriched MeSH terms.

Details

Package:	meshr
Version:	1.2.6
Date:	3-20-2015
biocViews:	AnnotationData, FunctionalAnnotation, Bioinformatics, Statistics, Annotation, MultipleComparisons
Depends:	R (>= 3.0.1), cummeRbund, org.Hs.eg.db, fdrtool, Category, BiocGenerics, methods, MeSH.db, MeSH.AOR.db, MeSH.PCR.db, MeSHDbi, MeSH.Hsa.eg.db, MeSH.Aca.eg.db, MeSH.Atu.K84.eg.db, MeSH.Bsu.168.eg.db, MeSH.Syn.eg.db
Imports:
Suggests:
License:	Artistic-2.0

Index:

meshHyperGTest performs a hypergeometric statistical test.

Further information is available in the vignettes.

Author(s)

Gota Morota, Koki Tsuyuzaki, Takeru Nakazato, Itoshi Nikaido

Maintainer: Koki Tsuyuzaki <[e-mail]>

See Also

MeSHHyperGParams-class, MeSHHyperGResult-class, meshHyperGTest

Examples

ls("package:meshr")

meshr documentation built on Nov. 8, 2020, 6:47 p.m.