meshr-package: Enrichment analysis for MeSH terms.

Description Details Author(s) See Also Examples

Description

meshr package conducts a MeSH enrichment analysis employing gene-MeSH annotation data. A hypergeometric test accounting for a multiple tesing correction is used to find significantly enriched MeSH terms.

Details

Package: meshr
Version: 1.2.6
Date: 3-20-2015
biocViews: AnnotationData, FunctionalAnnotation, Bioinformatics, Statistics, Annotation, MultipleComparisons
Depends: R (>= 3.0.1), cummeRbund, org.Hs.eg.db, fdrtool, Category, BiocGenerics, methods, MeSH.db, MeSH.AOR.db, MeSH.PCR.db, MeSHDbi, MeSH.Hsa.eg.db, MeSH.Aca.eg.db, MeSH.Atu.K84.eg.db, MeSH.Bsu.168.eg.db, MeSH.Syn.eg.db
Imports:
Suggests:
License: Artistic-2.0

Index:

1
meshHyperGTest performs a hypergeometric statistical test.

Further information is available in the vignettes.

Author(s)

Gota Morota, Koki Tsuyuzaki, Takeru Nakazato, Itoshi Nikaido

Maintainer: Koki Tsuyuzaki <[email protected]>

See Also

MeSHHyperGParams-class, MeSHHyperGResult-class, meshHyperGTest

Examples

1
ls("package:meshr")

meshr documentation built on May 6, 2019, 2:23 a.m.