SPIAssay: A Genetic-Based Assay for the Identification of Cell Lines

The SNP Panel Identification Assay (SPIA) is a package that enables an accurate determination of cell line identity from the genotype of single nucleotide polymorphisms (SNPs). The SPIA test allows to discern when two cell lines are close enough to be called similar and when they are not. Details about the method are available at "Demichelis et al. (2008) SNP panel identification assay (SPIA): a genetic-based assay for the identification of cell lines. Nucleic Acids Res., 3, 2446-2456".

Getting started

Package details

AuthorFrancesca Demichelis <francesca.demichelis@unitn.it>, Davide Prandi <davide.prandi@unitn.it>
Bioconductor views Bioinformatics MultipleComparisons QualityControl SNP
MaintainerDavide Prandi <davide.prandi@unitn.it>
LicenseGPL (>= 2)
URL http://www.r-project.org
Package repositoryView on CRAN
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SPIAssay documentation built on May 1, 2019, 11:12 p.m.