SPIAssay: A Genetic-Based Assay for the Identification of Cell Lines
Version 1.1.0

The SNP Panel Identification Assay (SPIA) is a package that enables an accurate determination of cell line identity from the genotype of single nucleotide polymorphisms (SNPs). The SPIA test allows to discern when two cell lines are close enough to be called similar and when they are not. Details about the method are available at "Demichelis et al. (2008) SNP panel identification assay (SPIA): a genetic-based assay for the identification of cell lines. Nucleic Acids Res., 3, 2446-2456".

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AuthorFrancesca Demichelis <francesca.demichelis@unitn.it>, Davide Prandi <davide.prandi@unitn.it>
Bioconductor views Bioinformatics MultipleComparisons QualityControl SNP
Date of publication2016-08-19 14:21:01
MaintainerDavide Prandi <davide.prandi@unitn.it>
LicenseGPL (>= 2)
Version1.1.0
URL http://www.r-project.org
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("SPIAssay")

Man pages

ComputingSPIADistance: Function 'ComputingSPIADistance' computes SPIA distance...
getSPIALimits: Function 'getSPIALimits' computes the limits for the SPIA...
SPIAPlot: Function to visualize the result of the SPIA test
SPIAssay: A genetic-based assay for the identification of cell lines
SPIATest: Function to compute SPIA test
toSPIAData: Function to code SNPs data into SPIA format

Functions

ComputingSPIADistance Man page Source code
SPIAPlot Man page Source code
SPIATest Man page Source code
SPIAssay Man page
getSPIALimits Man page Source code
toSPIAData Man page Source code

Files

NAMESPACE
R
R/ComputingSPIADistance.R
R/SPIAPlot.R
R/SPIATest.R
R/toSPIAData.R
R/getSPIALimits.R
MD5
DESCRIPTION
man
man/getSPIALimits.Rd
man/SPIAPlot.Rd
man/toSPIAData.Rd
man/SPIAssay.Rd
man/SPIATest.Rd
man/ComputingSPIADistance.Rd
SPIAssay documentation built on May 19, 2017, 12:14 p.m.