SPIAssay: A Genetic-Based Assay for the Identification of Cell Lines

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The SNP Panel Identification Assay (SPIA) is a package that enables an accurate determination of cell line identity from the genotype of single nucleotide polymorphisms (SNPs). The SPIA test allows to discern when two cell lines are close enough to be called similar and when they are not. Details about the method are available at "Demichelis et al. (2008) SNP panel identification assay (SPIA): a genetic-based assay for the identification of cell lines. Nucleic Acids Res., 3, 2446-2456".

Author
Francesca Demichelis <francesca.demichelis@unitn.it>, Davide Prandi <davide.prandi@unitn.it>
Date of publication
2016-08-19 14:21:01
Maintainer
Davide Prandi <davide.prandi@unitn.it>
License
GPL (>= 2)
Version
1.1.0
URLs

View on CRAN

Man pages

ComputingSPIADistance
Function 'ComputingSPIADistance' computes SPIA distance...
getSPIALimits
Function 'getSPIALimits' computes the limits for the SPIA...
SPIAPlot
Function to visualize the result of the SPIA test
SPIAssay
A genetic-based assay for the identification of cell lines
SPIATest
Function to compute SPIA test
toSPIAData
Function to code SNPs data into SPIA format

Files in this package

SPIAssay
SPIAssay/NAMESPACE
SPIAssay/R
SPIAssay/R/ComputingSPIADistance.R
SPIAssay/R/SPIAPlot.R
SPIAssay/R/SPIATest.R
SPIAssay/R/toSPIAData.R
SPIAssay/R/getSPIALimits.R
SPIAssay/MD5
SPIAssay/DESCRIPTION
SPIAssay/man
SPIAssay/man/getSPIALimits.Rd
SPIAssay/man/SPIAPlot.Rd
SPIAssay/man/toSPIAData.Rd
SPIAssay/man/SPIAssay.Rd
SPIAssay/man/SPIATest.Rd
SPIAssay/man/ComputingSPIADistance.Rd