globaltest: Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

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The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

Author
Jelle Goeman and Jan Oosting, with contributions by Livio Finos and Aldo Solari
Date of publication
None
Maintainer
Jelle Goeman <j.j.goeman@lumc.nl>
License
GPL (>= 2)
Version
5.28.0

View on Bioconductor

Man pages

comparative
Comparative proportions for the Global Test
diagnostics
Global Test diagnostic plots
genesettesting
Gene set testing of gene set databases using Global Test
goodnessoffit
Goodness of fit testing in regression models using Global...
gt
Global Test
gt.object-class
Class "gt.object" for storing the result of the function gt
gtoptions
Options for globaltest package
mlogit
Multinomial Logistic Regression
multtest
Multiple testing correction for the Global Test

Files in this package

globaltest/ChangeLog
globaltest/DESCRIPTION
globaltest/NAMESPACE
globaltest/R
globaltest/R/comparative.R
globaltest/R/diagnosticplots.R
globaltest/R/focuslevel.R
globaltest/R/generalizedFdistribution.R
globaltest/R/genesettesting.R
globaltest/R/goodnessoffit.R
globaltest/R/gt-object.R
globaltest/R/gt.R
globaltest/R/inheritance.R
globaltest/R/mlogit.R
globaltest/R/models.R
globaltest/R/options.R
globaltest/R/utilities.R
globaltest/build
globaltest/build/vignette.rds
globaltest/inst
globaltest/inst/CITATION
globaltest/inst/doc
globaltest/inst/doc/GlobalTest.R
globaltest/inst/doc/GlobalTest.Rnw
globaltest/inst/doc/GlobalTest.pdf
globaltest/man
globaltest/man/comparative.Rd
globaltest/man/diagnostics.Rd
globaltest/man/genesettesting.Rd
globaltest/man/goodnessoffit.Rd
globaltest/man/gt.Rd
globaltest/man/gt.object-class.Rd
globaltest/man/gtoptions.Rd
globaltest/man/mlogit.Rd
globaltest/man/multtest.Rd
globaltest/vignettes
globaltest/vignettes/GlobalTest.Rnw
globaltest/vignettes/GlobalTest.bib