globaltest: Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

AuthorJelle Goeman and Jan Oosting, with contributions by Livio Finos and Aldo Solari
Date of publicationNone
MaintainerJelle Goeman <j.j.goeman@lumc.nl>
LicenseGPL (>= 2)
Version5.28.0

View on Bioconductor

Functions

alias<- Man page
alias<-,gt.object-method Man page
alias,gt.object-method Man page
bbase Man page
btensor Man page
coefficients,mlogit-method Man page
comparative Man page
covariates Man page
diagnostics Man page
draw Man page
extract Man page
extract,gt.object-method Man page
features Man page
findFocus Man page
fitted.values,mlogit-method Man page
focusLevel Man page
globaltest Man page
gt Man page
gtBroad Man page
gtConcept Man page
gtGO Man page
gtKEGG Man page
gtKS Man page
gtLI Man page
gt.object Man page
[,gt.object,ANY,ANY,ANY-method Man page
gt.object-class Man page
[,gt.object-method Man page
[[,gt.object-method Man page
gt.options Man page
gtPS Man page
hist,gt.object-method Man page
inheritance Man page
leafNodes Man page
length,gt.object-method Man page
mlogit Man page
mlogit-class Man page
model.matrix,gt.object-method Man page
names<-,gt.object-method Man page
names,gt.object-method Man page
p.adjust,gt.object-method Man page
p.value Man page
p.value,gt.object-method Man page
reparamZ Man page
residuals,mlogit-method Man page
result Man page
result,gt.object-method Man page
reweighZ Man page
show,gt.object-method Man page
show,mlogit-method Man page
size Man page
size,gt.object-method Man page
sort,gt.object-method Man page
sterms Man page
sterms,gt.object-method Man page
subjects Man page
subsets Man page
subsets,gt.object-method Man page
summary,gt.object-method Man page
summary,mlogit-method Man page
weights,gt.object-method Man page
z.score Man page
z.score,gt.object-method Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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