fuchikoma detects differentially expressed genes (DEGs) in one of multiple clusters. To detect DEGs, fuchikoma has two calculation mode; "supervised-mode" and "unsupervised-mode". In supervised-mode, fuchikoma detects DEGs by using a label vector, in which the cluster of each sample or cell is written. In unsupervised-mode, fuchikoma detects DEGs without the label vector. In this mode, user run the diffusion map, and specify which diffusion components contribute to the difference of such cluster.
|Author||Koki Tsuyuzaki, Haruka Ozaki, Mika Yoshimura, Itoshi Nikaido|
|Bioconductor views||Bioinformatics Clustering DifferentialExpression HighThroughputSequencing MultipleComparisons RNAseq Sequencing Software|
|Maintainer||Koki Tsuyuzaki <[email protected]>|
|Package repository||View on GitHub|
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