miRcomp: Tools to assess and compare miRNA expression estimatation methods

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

AuthorMatthew N. McCall <mccallm@gmail.com>, Lauren Kemperman <lkemperm@u.rochester.edu>
Date of publicationNone
MaintainerMatthew N. McCall <mccallm@gmail.com>
LicenseGPL-3 | file LICENSE
Version1.4.0

View on Bioconductor

Files

miRcomp/DESCRIPTION
miRcomp/LICENSE
miRcomp/NAMESPACE
miRcomp/R
miRcomp/R/accuracy.R miRcomp/R/checkObject.R miRcomp/R/completeFeatures.R miRcomp/R/expressionComp.R miRcomp/R/limitOfDetection.R miRcomp/R/miRcompShinyApp.R miRcomp/R/precision.R miRcomp/R/qualityAssessment.R miRcomp/R/titrationResponse.R
miRcomp/build
miRcomp/build/vignette.rds
miRcomp/data
miRcomp/data/datalist
miRcomp/data/lifetech.rda
miRcomp/data/qpcRb4.rda
miRcomp/data/qpcRb5.rda
miRcomp/data/qpcRdefault.rda
miRcomp/data/qpcRl5.rda
miRcomp/data/qpcRlinexp.rda
miRcomp/inst
miRcomp/inst/CITATION
miRcomp/inst/NEWS.Rd
miRcomp/inst/doc
miRcomp/inst/doc/miRcomp.R
miRcomp/inst/doc/miRcomp.Rmd
miRcomp/inst/doc/miRcomp.html
miRcomp/inst/shinyapp
miRcomp/inst/shinyapp/app.R
miRcomp/inst/unitTests
miRcomp/inst/unitTests/test_accuracy.R
miRcomp/inst/unitTests/test_completeFeatures.R
miRcomp/inst/unitTests/test_limitOfDetection.R
miRcomp/inst/unitTests/test_precision.R
miRcomp/inst/unitTests/test_titrationResponse.R
miRcomp/man
miRcomp/man/accuracy.Rd miRcomp/man/completeFeatures.Rd miRcomp/man/expressionComp.Rd miRcomp/man/lifetech.Rd miRcomp/man/limitOfDetection.Rd miRcomp/man/miRcompShinyApp.Rd miRcomp/man/precision.Rd miRcomp/man/qpcRb4.Rd miRcomp/man/qpcRb5.Rd miRcomp/man/qpcRdefault.Rd miRcomp/man/qpcRl5.Rd miRcomp/man/qpcRlinexp.Rd miRcomp/man/qualityAssessment.Rd miRcomp/man/titrationResponse.Rd
miRcomp/tests
miRcomp/tests/runTests.R
miRcomp/vignettes
miRcomp/vignettes/design.png
miRcomp/vignettes/miRcomp.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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