farms: FARMS - Factor Analysis for Robust Microarray Summarization

The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("farms")
AuthorDjork-Arne Clevert <okko@clevert.de>
Bioconductor views GeneExpression Microarray Preprocessing QualityControl
Date of publicationNone
MaintainerDjork-Arne Clevert <okko@clevert.de>
LicenseLGPL (>= 2.1)
Version1.26.0
http://www.bioinf.jku.at/software/farms/farms.html

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/AllGenerics.R R/INIcalls-methods.R R/farms.R R/getI_Eset-methods.R R/getI_ProbeSets-methods.R R/getNI_Eset-methods.R R/getNI_ProbeSets-methods.R R/plot-methods.R R/summary-methods.R R/zzz.R
build
build/vignette.rds
data
data/testAffyBatch.rda
inst
inst/CITATION
inst/doc
inst/doc/farms.R
inst/doc/farms.Rnw
inst/doc/farms.pdf
man
man/INI_Calls-class.rd
man/INIcalls-methods.rd
man/dummy.Rd
man/expFarms.rd
man/generateExprVal.method.farms.rd
man/getI_Eset-methods.rd
man/getI_ProbeSets-methods.rd
man/getNI_Eset-methods.rd
man/getNI_ProbeSets-methods.rd
man/lFarms.rd
man/plot-methods.rd
man/qFarms.rd
man/summary-methods.rd
man/testAffyBatch.Rd
vignettes
vignettes/bioinf-article.txi
vignettes/bioinf-bar.png
vignettes/bioinf.cls
vignettes/farms.Rnw
vignettes/farms.bib
vignettes/farms_defs.sty
vignettes/natbib.bst
vignettes/natbib.sty

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.