qsea (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides several functionalities for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.
|Author||Matthias Lienhard, Lukas Chavez, Ralf Herwig|
|Bioconductor views||ChIPSeq ChipOnChip CopyNumberVariation CpGIsland DNAMethylation DifferentialMethylation Normalization Preprocessing QualityControl Sequencing Visualization|
|Maintainer||Matthias Lienhard <[email protected]>|
|Package repository||View on GitHub|
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