MatthiasLienhard/qsea: IP-seq data analysis and vizualization

qsea (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides several functionalities for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.

Getting started

Package details

Bioconductor views ChIPSeq ChipOnChip CopyNumberVariation CpGIsland DNAMethylation DifferentialMethylation Normalization Preprocessing QualityControl Sequencing Visualization
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
MatthiasLienhard/qsea documentation built on March 22, 2023, 1:15 p.m.