cqn: Conditional quantile normalization

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("cqn")
AuthorJean (Zhijin) Wu, Kasper Daniel Hansen
Bioconductor views DifferentialExpression Preprocessing RNASeq
Date of publicationNone
MaintainerKasper Daniel Hansen <kasperdanielhansen@gmail.com>
LicenseArtistic-2.0
Version1.20.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/SQN.R R/cqn.R R/pickrell.R
build
build/vignette.rds
data
data/montgomery.subset.rda
data/sizeFactors.subset.rda
data/uCovar.rda
inst
inst/CITATION
inst/NEWS.Rd
inst/doc
inst/doc/cqn.R
inst/doc/cqn.Rnw
inst/doc/cqn.pdf
inst/script
inst/script/savedata.R
man
man/cqn.Rd man/cqnplot.Rd man/montgomery.subset.Rd
vignettes
vignettes/cqn.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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