cqn: Conditional quantile normalization
Version 1.22.0

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

AuthorJean (Zhijin) Wu, Kasper Daniel Hansen
Bioconductor views DifferentialExpression Preprocessing RNASeq
Date of publicationNone
MaintainerKasper Daniel Hansen <kasperdanielhansen@gmail.com>
LicenseArtistic-2.0
Version1.22.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("cqn")

Popular man pages

cqn: CQN (conditional quantile normalization) for RNA-Seq data
cqnplot: Plot the systematic effect estimated as part of a CQN...
montgomery.subset: Mongtomery RNA-seq data.
See all...

All man pages Function index File listing

Man pages

cqn: CQN (conditional quantile normalization) for RNA-Seq data
cqnplot: Plot the systematic effect estimated as part of a CQN...
montgomery.subset: Mongtomery RNA-seq data.

Functions

SQN2 Source code
cqn Man page Source code
cqn.fixedlength Man page Source code
cqnplot Man page Source code
mix.qn Source code
montgomery.subset Man page
norm.pickrell Source code
print.cqn Man page Source code
sizeFactors.subset Man page
uCovar Man page

Files

DESCRIPTION
NAMESPACE
R
R/SQN.R
R/cqn.R
R/pickrell.R
build
build/vignette.rds
data
data/montgomery.subset.rda
data/sizeFactors.subset.rda
data/uCovar.rda
inst
inst/CITATION
inst/NEWS.Rd
inst/doc
inst/doc/cqn.R
inst/doc/cqn.Rnw
inst/doc/cqn.pdf
inst/script
inst/script/savedata.R
man
man/cqn.Rd
man/cqnplot.Rd
man/montgomery.subset.Rd
vignettes
vignettes/cqn.Rnw
cqn documentation built on May 20, 2017, 10:06 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.