cqn: Conditional quantile normalization

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Author
Jean (Zhijin) Wu, Kasper Daniel Hansen
Date of publication
None
Maintainer
Kasper Daniel Hansen <kasperdanielhansen@gmail.com>
License
Artistic-2.0
Version
1.20.0

View on Bioconductor

Man pages

cqn
CQN (conditional quantile normalization) for RNA-Seq data
cqnplot
Plot the systematic effect estimated as part of a CQN...
montgomery.subset
Mongtomery RNA-seq data.

Files in this package

cqn/DESCRIPTION
cqn/NAMESPACE
cqn/R
cqn/R/SQN.R
cqn/R/cqn.R
cqn/R/pickrell.R
cqn/build
cqn/build/vignette.rds
cqn/data
cqn/data/montgomery.subset.rda
cqn/data/sizeFactors.subset.rda
cqn/data/uCovar.rda
cqn/inst
cqn/inst/CITATION
cqn/inst/NEWS.Rd
cqn/inst/doc
cqn/inst/doc/cqn.R
cqn/inst/doc/cqn.Rnw
cqn/inst/doc/cqn.pdf
cqn/inst/script
cqn/inst/script/savedata.R
cqn/man
cqn/man/cqn.Rd
cqn/man/cqnplot.Rd
cqn/man/montgomery.subset.Rd
cqn/vignettes
cqn/vignettes/cqn.Rnw