LVSmiRNA: LVS normalization for Agilent miRNA data

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Normalization of Agilent miRNA arrays.

Author
Stefano Calza, Suo Chen, Yudi Pawitan
Date of publication
None
Maintainer
Stefano Calza <stefano.calza@unibs.it>
License
GPL-2
Version
1.24.0

View on Bioconductor

Man pages

boxplot-methods
Methods for Function boxplot
estVC
Robust Linear Model to Estimate Residual Variance and Array...
exprs_assign-methods
~~ Methods for Function exprs<- in Package 'Biobase' ~~
exprs-methods
Methods for Function exprs
featureNames-method
Methods for Function featureNames
lvs
Least Variant Set selection and Normalization Function(s)
MIR-spike-in
Data example
plotRA
Plot of Residual Variance and Array Effect
preproc_assign-methods
Methods for Function preproc
preproc-methods
Methods for Function preproc
probeNames-methods
Methods for Function probeNames
read.mir
Read in miRNA Data from Agilent Feature Extractiion Output...
RLM
Robust Fitting of Linear Models
rlmFit
Fitter Functions for Robust Linear Models
sampleNames-methods
Methods for Function sampleNames
summarize
LVSmiRNA Summarization Function(s) for microRNA Microarray

Files in this package

LVSmiRNA/DESCRIPTION
LVSmiRNA/NAMESPACE
LVSmiRNA/R
LVSmiRNA/R/AllGenerics.R
LVSmiRNA/R/RLM.R
LVSmiRNA/R/estVC.R
LVSmiRNA/R/normalize.R
LVSmiRNA/R/readMIR.R
LVSmiRNA/R/summarize.R
LVSmiRNA/R/utils.R
LVSmiRNA/R/zzz.R
LVSmiRNA/build
LVSmiRNA/build/vignette.rds
LVSmiRNA/data
LVSmiRNA/data/MIR-spike-in.rda
LVSmiRNA/data/MIR_RA.rda
LVSmiRNA/inst
LVSmiRNA/inst/NEWS
LVSmiRNA/inst/doc
LVSmiRNA/inst/doc/LVSmiRNA.R
LVSmiRNA/inst/doc/LVSmiRNA.Rnw
LVSmiRNA/inst/doc/LVSmiRNA.pdf
LVSmiRNA/inst/extdata
LVSmiRNA/inst/extdata/Comparison_Array.txt
LVSmiRNA/man
LVSmiRNA/man/MIR-spike-in.Rd
LVSmiRNA/man/RLM.Rd
LVSmiRNA/man/boxplot-methods.Rd
LVSmiRNA/man/estVC.Rd
LVSmiRNA/man/exprs-methods.Rd
LVSmiRNA/man/exprs_assign-methods.Rd
LVSmiRNA/man/featureNames-method.Rd
LVSmiRNA/man/lvs.Rd
LVSmiRNA/man/plotRA.Rd
LVSmiRNA/man/preproc-methods.Rd
LVSmiRNA/man/preproc_assign-methods.Rd
LVSmiRNA/man/probeNames-methods.Rd
LVSmiRNA/man/read.mir.Rd
LVSmiRNA/man/rlmFit.Rd
LVSmiRNA/man/sampleNames-methods.Rd
LVSmiRNA/man/summarize.Rd
LVSmiRNA/src
LVSmiRNA/src/Makevars
LVSmiRNA/src/Makevars.win
LVSmiRNA/src/Rlapack.h
LVSmiRNA/src/basic_fns.c
LVSmiRNA/src/basic_fns.h
LVSmiRNA/src/init.c
LVSmiRNA/src/lvs_rlm.c
LVSmiRNA/vignettes
LVSmiRNA/vignettes/LVSmiRNA.Rnw
LVSmiRNA/vignettes/LVSmiRNA.bib