LVSmiRNA: LVS normalization for Agilent miRNA data

Normalization of Agilent miRNA arrays.

AuthorStefano Calza, Suo Chen, Yudi Pawitan
Date of publicationNone
MaintainerStefano Calza <stefano.calza@unibs.it>
LicenseGPL-2
Version1.24.0

View on Bioconductor

Functions

boxplot,EList-method Man page
boxplot-methods Man page
boxplot,RGList-method Man page
estVC Man page
estVC.EList Man page
estVC.RGList Man page
exprs<-,AffyBatch,ANY-method Man page
exprs<-,EList,ANY-method Man page
exprs,EList-method Man page
exprs<-,ExpressionSet,matrix-method Man page
exprs<--methods Man page
exprs-methods Man page
exprs<-,RGList,ANY-method Man page
exprs,RGList-method Man page
exprs<-,SnpSet,matrix-method Man page
featureNames,EList-method Man page
featureNames-methods Man page
featureNames,RGList-method Man page
lvs Man page
lvs.EList Man page
lvs.RGList Man page
MIR Man page
MIR_RA Man page
MIR.RA Man page
MIR-spike-in Man page
normalize.lvs Man page
plot-method Man page
plot,RA,ANY-method Man page
preproc<-,EList-method Man page
preproc,EList-method Man page
preproc<--methods Man page
preproc-methods Man page
preproc<-,RGList-method Man page
preproc,RGList-method Man page
probeNames,EList-method Man page
probeNames-methods Man page
probeNames,RGList-method Man page
read.mir Man page
RLM Man page
rlmFit Man page
sampleNames,EList-method Man page
sampleNames-methods Man page
sampleNames,RGList-method Man page
summarize Man page
summarize.EList Man page
summarize.RGList Man page

Files

LVSmiRNA/DESCRIPTION
LVSmiRNA/NAMESPACE
LVSmiRNA/R
LVSmiRNA/R/AllGenerics.R LVSmiRNA/R/RLM.R LVSmiRNA/R/estVC.R LVSmiRNA/R/normalize.R LVSmiRNA/R/readMIR.R LVSmiRNA/R/summarize.R LVSmiRNA/R/utils.R LVSmiRNA/R/zzz.R
LVSmiRNA/build
LVSmiRNA/build/vignette.rds
LVSmiRNA/data
LVSmiRNA/data/MIR-spike-in.rda
LVSmiRNA/data/MIR_RA.rda
LVSmiRNA/inst
LVSmiRNA/inst/NEWS
LVSmiRNA/inst/doc
LVSmiRNA/inst/doc/LVSmiRNA.R
LVSmiRNA/inst/doc/LVSmiRNA.Rnw
LVSmiRNA/inst/doc/LVSmiRNA.pdf
LVSmiRNA/inst/extdata
LVSmiRNA/inst/extdata/Comparison_Array.txt
LVSmiRNA/man
LVSmiRNA/man/MIR-spike-in.Rd LVSmiRNA/man/RLM.Rd LVSmiRNA/man/boxplot-methods.Rd LVSmiRNA/man/estVC.Rd LVSmiRNA/man/exprs-methods.Rd LVSmiRNA/man/exprs_assign-methods.Rd LVSmiRNA/man/featureNames-method.Rd LVSmiRNA/man/lvs.Rd LVSmiRNA/man/plotRA.Rd LVSmiRNA/man/preproc-methods.Rd LVSmiRNA/man/preproc_assign-methods.Rd LVSmiRNA/man/probeNames-methods.Rd LVSmiRNA/man/read.mir.Rd LVSmiRNA/man/rlmFit.Rd LVSmiRNA/man/sampleNames-methods.Rd LVSmiRNA/man/summarize.Rd
LVSmiRNA/src
LVSmiRNA/src/Makevars
LVSmiRNA/src/Makevars.win
LVSmiRNA/src/Rlapack.h
LVSmiRNA/src/basic_fns.c
LVSmiRNA/src/basic_fns.h
LVSmiRNA/src/init.c
LVSmiRNA/src/lvs_rlm.c
LVSmiRNA/vignettes
LVSmiRNA/vignettes/LVSmiRNA.Rnw
LVSmiRNA/vignettes/LVSmiRNA.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.