recoup: An R package for the creation of complex genomic profile plots
Version 1.4.0

recoup calculates and plots signal profiles created from short sequence reads derived from Next Generation Sequencing technologies. The profiles provided are either sumarized curve profiles or heatmap profiles. Currently, recoup supports genomic profile plots for reads derived from ChIP-Seq and RNA-Seq experiments. The package uses ggplot2 and ComplexHeatmap graphics facilities for curve and heatmap coverage profiles respectively.

Package details

AuthorPanagiotis Moulos <moulos@fleming.gr>
Bioconductor views ChIPSeq Coverage GeneExpression Preprocessing QualityControl RNASeq Sequencing Software
MaintainerPanagiotis Moulos <moulos@fleming.gr>
LicenseGPL (>= 3)
Version1.4.0
URL https://github.com/pmoulos/recoup
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("recoup")

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recoup documentation built on May 31, 2017, 11:23 a.m.