NTW: Predict gene network using an Ordinary Differential Equation (ODE) based method
Version 1.26.0

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

Browse man pages Browse package API and functions Browse package files

AuthorWei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini
Bioconductor views Preprocessing
Date of publicationNone
MaintainerYuanhua Liu <liuyuanhua@picb.ac.cn>
LicenseGPL-2
Version1.26.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("NTW")

Man pages

A.estimation.Srow: Estimation of a single row in matrix A with the perturbation...
AP.estimation.Srow: Estimation of a single row in gene interaction matrix A and...
comb.matrix: Create all combinations of vectors
methods.regression: Regression methods to estimate a single row in A with fixed...
NTW: Estimation of gene interaction matrix A and perturbation...
NTW-package: Gene interaction network and perturbation targets predictions
patterns.priorA: Approaches to use a priori known gene association information...
P.preestimation: Pre-estimation of the transcriptional pertubation targets...
sos.data: SOS pathway perturbation data

Functions

A.estimation.Srow Man page
AP.estimation.Srow Man page
NTW Man page
NTW-package Man page
P.preestimation Man page
backward Man page
comb.matrix Man page
forward Man page
method.geo Man page
method.ml Man page
method.sse Man page
sos.data Man page

Files

DESCRIPTION
NAMESPACE
R
R/A.estimation.Srow.R
R/AP.estimation.Srow.R
R/NTW.R
R/P.preestimation.R
R/backward.R
R/comb.matrix.R
R/forward.R
R/method.geo.R
R/method.ml.R
R/method.sse.R
build
build/vignette.rds
data
data/sos.data.rda
inst
inst/NEWS
inst/doc
inst/doc/NTW.R
inst/doc/NTW.Rnw
inst/doc/NTW.pdf
man
man/A.estimation.Srow.Rd
man/AP.estimation.Srow.Rd
man/NTW-package.Rd
man/NTW.Rd
man/P.preestimation.Rd
man/comb.matrix.Rd
man/methods.regression.Rd
man/patterns.priorA.Rd
man/sos.data.Rd
vignettes
vignettes/Addendum.bib
vignettes/NTW.Rnw
vignettes/NTWfunctions.jpg
NTW documentation built on May 20, 2017, 10:32 p.m.