ReQON: Recalibrating Quality Of Nucleotides

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Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author
Christopher Cabanski, Keary Cavin, Chris Bizon
Date of publication
None
Maintainer
Christopher Cabanski <cabanskc@gmail.com>
License
GPL-2
Version
1.20.0

View on Bioconductor

Man pages

FWSEplot
Plot reported vs. empirical quality.
QualFreqPlot
Plot frequency distributions of quality scores.
ReadPosErrorPlot
Plot distribution of errors by read position.
ReQON
Recalibrating Quality Of Nucleotides

Files in this package

ReQON/.BBSoptions
ReQON/DESCRIPTION
ReQON/NAMESPACE
ReQON/R
ReQON/R/FWSEplot.R
ReQON/R/QualFreqPlot.R
ReQON/R/ReQON.R
ReQON/R/ReadPosErrorPlot.R
ReQON/build
ReQON/build/vignette.rds
ReQON/inst
ReQON/inst/NEWS
ReQON/inst/doc
ReQON/inst/doc/ReQON.R
ReQON/inst/doc/ReQON.Rnw
ReQON/inst/doc/ReQON.pdf
ReQON/inst/java
ReQON/inst/java/BAMRecalibrator.jar
ReQON/inst/java/BAMUnpacker.jar
ReQON/man
ReQON/man/FWSEplot.Rd
ReQON/man/QualFreqPlot.Rd
ReQON/man/ReQON.Rd
ReQON/man/ReadPosErrorPlot.Rd
ReQON/vignettes
ReQON/vignettes/ReQON.Rnw