pmoulos/recoup: An R package for the creation of complex genomic profile plots

recoup calculates and plots signal profiles created from short sequence reads derived from Next Generation Sequencing technologies. The profiles provided are either sumarized curve profiles or heatmap profiles. Currently, recoup supports genomic profile plots for reads derived from ChIP-Seq and RNA-Seq experiments. The package uses ggplot2 and ComplexHeatmap graphics facilities for curve and heatmap coverage profiles respectively.

Getting started

Package details

AuthorPanagiotis Moulos <moulos@fleming.gr>
Bioconductor views ATACSeq Alignment ChIPSeq ChipOnChip Coverage DataImport GeneExpression ImmunoOncology Preprocessing QualityControl RNASeq Sequencing Software
MaintainerPanagiotis Moulos <moulos@fleming.gr>
LicenseGPL (>= 3)
Version1.19.14
URL https://github.com/pmoulos/recoup
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("pmoulos/recoup")
pmoulos/recoup documentation built on Feb. 4, 2021, 2:13 a.m.