Files in pmoulos/recoup
An R package for the creation of complex genomic profile plots
.Rbuildignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/annotation.R
R/argcheck.R
R/count.R
R/coverage.R
R/plot.R
R/profile.R
R/query.R
R/ranges.R
R/recoup.R
R/util.R
README.md
data/recoup_test_data.rda
inst/NEWS
inst/dummy.gtf
inst/extdata/Set8KO_H4K20me1_50kr.bam
inst/extdata/WT_H4K20me1_50kr.bam
inst/unitTests/test_recoup.R
man/buildAnnotationDatabase.Rd
man/buildAnnotationStore.Rd
man/buildCustomAnnotation.Rd
man/calcCoverage.Rd
man/coverageRef.Rd
man/coverageRnaRef.Rd
man/getAnnotation.Rd
man/getBiotypes.Rd
man/getInstalledAnnotations.Rd
man/importCustomAnnotation.Rd
man/kmeansDesign.Rd
man/loadAnnotation.Rd
man/mergeRuns.Rd
man/preprocessRanges.Rd
man/profileMatrix.Rd
man/recoup-defunct.Rd
man/recoup-deprecated.Rd
man/recoup.Rd
man/recoupCorrelation.Rd
man/recoupHeatmap.Rd
man/recoupPlot.Rd
man/recoupProfile.Rd
man/recoup_test_data.Rd
man/removeData.Rd
man/rpMatrix.Rd
man/simpleGetSet.Rd
man/sliceObj.Rd
tests/runTests.R
vignettes/recoup_intro.Rmd
