getInstalledAnnotations: Load a recoup annotation element

In pmoulos/recoup: An R package for the creation of complex genomic profile plots

Load a recoup annotation element

Description

This function returns a data frame with information on locally installed, supported or custom, annotations.

Usage

    getInstalledAnnotations(obj = NULL)

Arguments

obj	NULL or the path to a recoup SQLite annotation database. If NULL, the function will try to guess the location of the SQLite database.

Value

The function returns a data.frame object with the installed local annotations.

Author(s)

Panagiotis Moulos

Examples

db <- file.path(system.file(package="recoup"),
  "annotation.sqlite")
if (file.exists(db))
  ig <- getInstalledAnnotations(obj=db)

pmoulos/recoup documentation built on May 20, 2024, 2:22 a.m.