BUS: Gene network reconstruction

This package can be used to compute associations among genes (gene-networks) or between genes and some external traits (i.e. clinical).

Author
Yin Jin, Hesen Peng, Lei Wang, Raffaele Fronza, Yuanhua Liu and Christine Nardini
Date of publication
None
Maintainer
Yuanhua Liu <liuyuanhua@picb.ac.cn>
License
GPL-3
Version
1.30.0

View on Bioconductor

Man pages

BUS
A wrapper function for matrices of p-value and predicted...
BUS-package
For network reconstruction.
copasi
copasi data
gene.pvalue
Calculates p-value for gene-gene interaction
gene.similarity
Calculate adjacency matrix for gene-gene interaction
gene.trait.pvalue
Calculate p-value for gene-trait interaction
gene.trait.similarity
Calculate similarity for gene-trait interaction
pred.network
Predict the network
tumors.miRNA
miRNA data from Human brain tumors
tumors.mRNA
Gene expression data from Human brain tumors

Files in this package

BUS/DESCRIPTION
BUS/NAMESPACE
BUS/R
BUS/R/BUS.R
BUS/R/gene.pvalue.R
BUS/R/gene.similarity.R
BUS/R/gene.trait.pvalue.R
BUS/R/gene.trait.similarity.R
BUS/R/pred.network.R
BUS/build
BUS/build/vignette.rds
BUS/data
BUS/data/copasi.rda
BUS/data/tumors.mRNA.rda
BUS/data/tumors.miRNA.rda
BUS/inst
BUS/inst/NEWS
BUS/inst/doc
BUS/inst/doc/bus.R
BUS/inst/doc/bus.pdf
BUS/inst/doc/bus.rnw
BUS/man
BUS/man/BUS-package.Rd
BUS/man/BUS.Rd
BUS/man/copasi.Rd
BUS/man/gene.pvalue.Rd
BUS/man/gene.similarity.Rd
BUS/man/gene.trait.pvalue.Rd
BUS/man/gene.trait.similarity.Rd
BUS/man/pred.network.Rd
BUS/man/tumors.mRNA.Rd
BUS/man/tumors.miRNA.Rd
BUS/src
BUS/src/BUS.cpp
BUS/src/BUS.h
BUS/vignettes
BUS/vignettes/bus.rnw
BUS/vignettes/fig1.jpg
BUS/vignettes/latex8.sty