BUS: Gene network reconstruction
Version 1.32.0

This package can be used to compute associations among genes (gene-networks) or between genes and some external traits (i.e. clinical).

AuthorYin Jin, Hesen Peng, Lei Wang, Raffaele Fronza, Yuanhua Liu and Christine Nardini
Bioconductor views Preprocessing
Date of publicationNone
MaintainerYuanhua Liu <liuyuanhua@picb.ac.cn>
LicenseGPL-3
Version1.32.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("BUS")

Getting started

Package overview

Popular man pages

BUS-package: For network reconstruction.
copasi: copasi data
gene.pvalue: Calculates p-value for gene-gene interaction
gene.similarity: Calculate adjacency matrix for gene-gene interaction
gene.trait.pvalue: Calculate p-value for gene-trait interaction
pred.network: Predict the network
tumors.mRNA: Gene expression data from Human brain tumors
See all...

All man pages Function index File listing

Man pages

BUS: A wrapper function for matrices of p-value and predicted...
BUS-package: For network reconstruction.
copasi: copasi data
gene.pvalue: Calculates p-value for gene-gene interaction
gene.similarity: Calculate adjacency matrix for gene-gene interaction
gene.trait.pvalue: Calculate p-value for gene-trait interaction
gene.trait.similarity: Calculate similarity for gene-trait interaction
pred.network: Predict the network
tumors.miRNA: miRNA data from Human brain tumors
tumors.mRNA: Gene expression data from Human brain tumors

Functions

BUS Man page
BUS-package Man page
copasi Man page
gene.pvalue Man page
gene.similarity Man page
gene.trait.pvalue Man page
gene.trait.similarity Man page
pred.network Man page
tumors.mRNA Man page
tumors.miRNA Man page

Files

DESCRIPTION
NAMESPACE
R
R/BUS.R
R/gene.pvalue.R
R/gene.similarity.R
R/gene.trait.pvalue.R
R/gene.trait.similarity.R
R/pred.network.R
build
build/vignette.rds
data
data/copasi.rda
data/tumors.mRNA.rda
data/tumors.miRNA.rda
inst
inst/NEWS
inst/doc
inst/doc/bus.R
inst/doc/bus.pdf
inst/doc/bus.rnw
man
man/BUS-package.Rd
man/BUS.Rd
man/copasi.Rd
man/gene.pvalue.Rd
man/gene.similarity.Rd
man/gene.trait.pvalue.Rd
man/gene.trait.similarity.Rd
man/pred.network.Rd
man/tumors.mRNA.Rd
man/tumors.miRNA.Rd
src
src/BUS.cpp
src/BUS.h
vignettes
vignettes/bus.rnw
vignettes/fig1.jpg
vignettes/latex8.sty
BUS documentation built on May 20, 2017, 10:30 p.m.

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