copasi: copasi data
In BUS: Gene network reconstruction
Description
This dataset is taken from Copasi2 (Complex Pathway Simulator), a software for simulation and analysis of biochemical networks. The system generates random
artificial gene networks according to well-defined topological and kinetic properties. These are used to run in silico experiments simulating real laboratory micro-array experiments. Noise with controlled properties is added to the simulation results several times emulating measurement replicates, before expression ratios
are calculated. This series consists of 150 artificial gene networks. Each network consists of 100 genes with a total of 200 gene interactions (on average each gene has 2 modulators).
Format
A data frame is size of 100x100, the 100 rows represent 100 genes and 100 columns for 100 experiments.
References
See http://www.comp-sys-bio.org/AGN/data.html for detailed information.
BUS documentation built on Nov. 8, 2020, 6:55 p.m.
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Description
This dataset is taken from Copasi2 (Complex Pathway Simulator), a software for simulation and analysis of biochemical networks. The system generates random artificial gene networks according to well-defined topological and kinetic properties. These are used to run in silico experiments simulating real laboratory micro-array experiments. Noise with controlled properties is added to the simulation results several times emulating measurement replicates, before expression ratios are calculated. This series consists of 150 artificial gene networks. Each network consists of 100 genes with a total of 200 gene interactions (on average each gene has 2 modulators).
Format
A data frame is size of 100x100, the 100 rows represent 100 genes and 100 columns for 100 experiments.
References
See http://www.comp-sys-bio.org/AGN/data.html for detailed information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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