A pipeline which processes single cell RNA-seq (scRNA-seq) reads from CEL-seq and CEL-seq2 protocols. Demultiplex scRNA-seq FASTQ files, align reads to reference genome using Rsubread, and generate UMI filtered count matrix. Also provide visualizations of read alignments and pre- and post-alignment QC metrics.
|Author||Zhe Wang [aut, cre], Junming Hu [aut], Joshua Campbell [aut]|
|Bioconductor views||Alignment ImmunoOncology Preprocessing QualityControl RNASeq Sequencing SingleCell Software Technology Visualization WorkflowStep|
|Maintainer||Zhe Wang <[email protected]>|
|License||MIT + file LICENSE|
|Package repository||View on Bioconductor|
Install the latest version of this package by entering the following in R:
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.