Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

Global functions | |
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alignRsubread | Man page Source code |

alignRsubreadUnit | Source code |

bamExample | Man page |

bamIterator | Source code |

barcodeExample | Man page |

checkCellBarcodes | Source code |

checkCores | Source code |

countUMI | Man page Source code |

countUmiUnit | Source code |

demultiplex | Man page Source code |

demultiplexUnit | Source code |

getAlignmentFilePaths | Source code |

getGeneAnnotationRefGenome | Source code |

gtfReadDb | Source code |

gview | Man page Source code |

logMessages | Source code |

plotCounts | Source code |

plotFracProteinCodingGenes | Source code |

plotFracProteinCodingTranscripts | Source code |

plotGeneToGenomeFraction | Source code |

plotGeneToTotalFraction | Source code |

plotGenes | Source code |

plotGenesPerMillionReads | Source code |

plotGenomeReadsFraction | Source code |

plotMtCounts | Source code |

plotMtCountsFraction | Source code |

plotReadsMappedToGenes | Source code |

plotReadsMappedToGenome | Source code |

plotTotalReads | Source code |

propmappedWrapper | Source code |

qcplots | Man page Source code |

removeLastExtension | Source code |

rview | Man page Source code |

sceExample | Man page |

scruff | Man page Source code |

stripLeadingUnderscore | Source code |

tenxBamqc | Man page Source code |

tenxBamqcUnit | Source code |

themePublication | Source code |

toBam | Source code |

validCb | Man page |

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