Files in scruff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

LICENSE
DESCRIPTION
README.md
.BBSoptions
NAMESPACE
inst/NEWS
inst/doc/scruff.R inst/doc/scruff.Rmd inst/doc/scruff.pdf
inst/extdata/SRR5167880_E18_20160930_Neurons_Sample_01_filtered_barcode.tsv
inst/extdata/vandenBrink_1h1_L001_R2_001.fastq.gz
inst/extdata/GRCm38_MT.gtf
inst/extdata/vandenBrink_1h1_L001_R1_001.fastq.gz
inst/extdata/SRR5167880_E18_20160930_Neurons_Sample_01_5000.bam
inst/extdata/vandenBrink_b1_L001_R2_001.fastq.gz
inst/extdata/vandenBrink_b1_L001_R1_001.fastq.gz
inst/extdata/GRCm38_MT.fa
vignettes/scruff.Rmd R/scruff.R R/data.R R/scruffFunctions.R R/gview.R R/rview.R R/demultiplex.R R/qcplots.R R/alignRsubread.R R/tenxBamqc.R R/countUMI.R man/gview.Rd man/bamExample.Rd man/scruff.Rd man/barcodeExample.Rd man/qcplots.Rd man/rview.Rd man/countUMI.Rd man/sceExample.Rd man/tenxBamqc.Rd man/validCb.Rd man/demultiplex.Rd man/alignRsubread.Rd
build/vignette.rds
tests/testthat.R tests/testthat/testscruff.R
data/bamExample.rda
data/validCb.rda
data/sceExample.rda
data/barcodeExample.rda
scruff documentation built on Dec. 4, 2018, 6 p.m.