Files in scruff

Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

README.md

NAMESPACE

DESCRIPTION

LICENSE

R/countUMI.R R/alignRsubread.R R/data.R R/gview.R R/demultiplex.R R/scruffFunctions.R R/scruff.R R/rview.R R/tenxBamqc.R R/qcplots.R

inst/NEWS

inst/doc/scruff.Rmd

inst/doc/scruff.html

inst/doc/scruff.R

inst/extdata/vandenBrink_1h1_L001_R1_001.fastq.gz

inst/extdata/vandenBrink_1h1_L001_R2_001.fastq.gz

inst/extdata/SRR5167880_E18_20160930_Neurons_Sample_01_5000.bam

inst/extdata/GRCm38_MT.gtf

inst/extdata/GRCm38_MT.fa

inst/extdata/SRR5167880_E18_20160930_Neurons_Sample_01_filtered_barcode.tsv

build/vignette.rds

tests/testthat.R tests/testthat/testscruff.R vignettes/scruff.Rmd

data/barcodeExample.rda

data/validCb.rda

data/cbtop10000.rda

data/bamExample.rda

data/sceExample.rda

man/scruff.Rd man/gview.Rd man/validCb.Rd man/alignRsubread.Rd man/rview.Rd man/demultiplex.Rd man/sceExample.Rd man/barcodeExample.Rd man/tenxBamqc.Rd man/bamExample.Rd man/countUMI.Rd man/cbtop10000.Rd man/qcplots.Rd

scruff documentation built on Feb. 13, 2021, 2 a.m.