ABarray: Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

AuthorYongming Andrew Sun
Date of publicationNone
MaintainerYongming Andrew Sun <sunya@appliedbiosystems.com>
LicenseGPL
Version1.42.0

View on Bioconductor

Files in this package

ABarray/DESCRIPTION
ABarray/NAMESPACE
ABarray/R
ABarray/R/ABarray.R ABarray/R/ABarrayGUI.R ABarray/R/attachMessage.R ABarray/R/calcsn.R ABarray/R/concord.R ABarray/R/cvv.R ABarray/R/cvvPlot.R ABarray/R/doANOVA.R ABarray/R/doLPE.R ABarray/R/doPlotEset.R ABarray/R/doPlotFCT.R ABarray/R/doVennDiagram.R ABarray/R/drawVennDiagram.R ABarray/R/getMemberEset.R ABarray/R/getPantherMap.R ABarray/R/hclusterPlot.R ABarray/R/icpPlot.R ABarray/R/imputeFlag.R ABarray/R/lpe.fdr.BH.R ABarray/R/mamaplot.R ABarray/R/matrixPlot.R ABarray/R/mvaPair2.R ABarray/R/panel.cor.R ABarray/R/panel.scatter.R ABarray/R/qnNormalize.R ABarray/R/rgcolorsfunc.R ABarray/R/savejpg.R ABarray/R/scaleColorBar.R ABarray/R/snSummary.R
ABarray/build
ABarray/build/vignette.rds
ABarray/inst
ABarray/inst/doc
ABarray/inst/doc/ABarray.Rnw
ABarray/inst/doc/ABarray.pdf
ABarray/inst/doc/ABarrayGUI.Rnw
ABarray/inst/doc/ABarrayGUI.pdf
ABarray/man
ABarray/man/ABarray.Rd ABarray/man/ABarrayGUI.Rd ABarray/man/calcsn.Rd ABarray/man/concord.Rd ABarray/man/cvv.Rd ABarray/man/cvvPlot.Rd ABarray/man/doANOVA.Rd ABarray/man/doLPE.Rd ABarray/man/doPlotEset.Rd ABarray/man/doPlotFCT.Rd ABarray/man/doVennDiagram.Rd ABarray/man/drawVennDiagram.Rd ABarray/man/getMemberEset.Rd ABarray/man/getPantherMap.Rd ABarray/man/hclusterPlot.Rd ABarray/man/icpPlot.Rd ABarray/man/imputeFlag.Rd ABarray/man/lpe.fdr.BH.Rd ABarray/man/mamaplot.Rd ABarray/man/matrixPlot.Rd ABarray/man/mvaPair2.Rd ABarray/man/panel.cor.Rd ABarray/man/panel.scatter.Rd ABarray/man/qnNormalize.Rd ABarray/man/rgcolorsfunc.Rd ABarray/man/savejpg.Rd ABarray/man/scaleColorBar.Rd ABarray/man/snSummary.Rd
ABarray/vignettes
ABarray/vignettes/ABarray.Rnw
ABarray/vignettes/ABarrayGUI.Rnw
ABarray/vignettes/Figure
ABarray/vignettes/Figure/ab1700gui.pdf
ABarray/vignettes/Figure/dirChangeFig.pdf
ABarray/vignettes/Figure/dirSelectFig.pdf
ABarray/vignettes/Figure/venn-threeWay.pdf
ABarray/vignettes/Figure/venn-twoWay.pdf

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