icpPlot: icp plot function

In ABarray: Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Description

QC plot for internal control probes

Usage

icpPlot(controlData, colProbeID = 1, plotWhat = "Signal", pdfDir, jpgDir)

Arguments

controlData	Signal intensity matrix for icp probes
colProbeID	the column where probeID is located
plotWhat	Whether we are plotting signal or S/N
pdfDir	a directory where pdf files should be produced
jpgDir	a directory where jpg or bmp files should be produced

Value

A series of QC plots

Author(s)

Yongming Sun

Examples

##---- Do not call this function DIRECTLY !! ----

Example output

Welcome to Applied Biosystems AB1700
    This package performs analysis for AB1700
    gene expression data

Warning message:
no DISPLAY variable so Tk is not available 

ABarray documentation built on Nov. 8, 2020, 5:25 p.m.