MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, MEDIPS provides functionalities for the analysis of any kind of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential coverage between groups of samples and saturation and correlation analysis.
|Author||Lukas Chavez, Matthias Lienhard, Joern Dietrich, Isaac Lopez Moyado|
|Bioconductor views||ChIPSeq CopyNumberVariation Coverage CpGIsland DNAMethylation DifferentialExpression Genetics GenomeAnnotation Microarray Preprocessing QualityControl SequenceMatching Sequencing Visualization|
|Maintainer||Lukas Chavez <firstname.lastname@example.org>|
|Package repository||View on GitHub|
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