API for emmecola/MEDIPS
DNA IP-seq data analysis

Global functions
COUPLINGset Man page
COUPLINGset-class Man page
MEDIPS Man page
MEDIPS-package Man page
MEDIPS.Bam2GRanges Man page
MEDIPS.Bed2Granges Man page
MEDIPS.CpGenrich Man page Source code
MEDIPS.GenomicCoordinates Man page Source code
MEDIPS.addCNV Man page Source code
MEDIPS.calibrationCurve Man page Source code
MEDIPS.cnv Man page Source code
MEDIPS.correlation Man page Source code
MEDIPS.couplingVector Man page Source code
MEDIPS.createROIset Man page Source code
MEDIPS.createSet Man page Source code
MEDIPS.diffMeth Man page Source code
MEDIPS.exportWIG Man page Source code
MEDIPS.getAnnotation Man page Source code
MEDIPS.getPositions Man page Source code
MEDIPS.mergeFrames Man page Source code
MEDIPS.mergeSets Man page Source code
MEDIPS.meth Man page Source code
MEDIPS.plotCalibrationPlot Man page Source code
MEDIPS.plotSaturation Man page Source code
MEDIPS.plotSeqCoverage Man page Source code
MEDIPS.rms Man page Source code
MEDIPS.saturation Man page Source code
MEDIPS.selectROIs Man page Source code
MEDIPS.selectSig Man page Source code
MEDIPS.seqCoverage Man page Source code
MEDIPS.setAnnotation Man page Source code
MEDIPSroiSet Man page
MEDIPSroiSet-class Man page
MEDIPSset Man page
MEDIPSset-class Man page
ROI,MEDIPSroiSet-method Man page
adjustReads Man page Source code
bin.ROIs Man page Source code
bin_number Man page
bin_number,MEDIPSroiSet-method Man page
bin_size Man page
bin_size,MEDIPSset-method Man page
chr_lengths Man page
chr_lengths,COUPLINGset-method Man page
chr_lengths,MEDIPSroiSet-method Man page
chr_lengths,MEDIPSset-method Man page
chr_names Man page
chr_names,COUPLINGset-method Man page
chr_names,MEDIPSroiSet-method Man page
chr_names,MEDIPSset-method Man page
extend Man page
extend,MEDIPSroiSet-method Man page
extend,MEDIPSset-method Man page
genome_CF Man page
genome_CF,COUPLINGset-method Man page
genome_count Man page
genome_count,MEDIPSroiSet-method Man page
genome_count,MEDIPSset-method Man page
genome_name Man page
genome_name,COUPLINGset-method Man page
genome_name,MEDIPSroiSet-method Man page
genome_name,MEDIPSset-method Man page
getGRange Man page Source code
getMObjectFromWIG Man page Source code
getPairedGRange Man page Source code
getTypes Man page Source code
matDiff Man page Source code
matMax Man page Source code
matMean Man page Source code
matMin Man page Source code
matNnotNA Man page Source code
matSd Man page Source code
matTtest Man page Source code
number_pattern Man page
number_pattern,COUPLINGset-method Man page
number_regions Man page
number_regions,MEDIPSroiSet-method Man page
number_regions,MEDIPSset-method Man page
path_name Man page
path_name,MEDIPSroiSet-method Man page
path_name,MEDIPSset-method Man page
readRegionsFile Man page
rois Man page Man page
rois,MEDIPSroiSet-method Man page
sample_name Man page
sample_name,MEDIPSroiSet-method Man page
sample_name,MEDIPSset-method Man page
scanBamToGRanges Man page Source code
seq_pattern Man page
seq_pattern,COUPLINGset-method Man page
setTypes Man page Source code
shifted Man page
shifted,MEDIPSroiSet-method Man page
shifted,MEDIPSset-method Man page
show Man page
show,COUPLINGset-method Man page
show,MEDIPSroiSet-method Man page
show,MEDIPSset-method Man page
uniq Man page
uniq,MEDIPSroiSet-method Man page
uniq,MEDIPSset-method Man page
window_size Man page
window_size,COUPLINGset-method Man page
window_size,MEDIPSset-method Man page
emmecola/MEDIPS documentation built on May 13, 2017, 6:05 p.m.