CGHnormaliter: Normalization of array CGH data with imbalanced aberrations.

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CGHnormaliter")
AuthorBart P.P. van Houte, Thomas W. Binsl, Hannes Hettling
Bioconductor views Microarray Preprocessing
Date of publicationNone
MaintainerBart P.P. van Houte <bvhoute@few.vu.nl>
LicenseGPL (>= 3)
Version1.28.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/CGHnormaliter-internal.R R/CGHnormaliter.R
build
build/vignette.rds
data
data/Leukemia.txt
data/datalist
inst
inst/doc
inst/doc/CGHnormaliter.R
inst/doc/CGHnormaliter.Rnw
inst/doc/CGHnormaliter.pdf
man
man/CGHnormaliter-internal.Rd man/CGHnormaliter-package.Rd man/CGHnormaliter.Rd man/CGHnormaliter.write.table.Rd man/Leukemia.Rd
vignettes
vignettes/CGHnormaliter-method.pdf
vignettes/CGHnormaliter.Rnw
vignettes/CGHnormaliter.bib

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