CGHnormaliter: Normalization of array CGH data with imbalanced aberrations.

Share:

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Author
Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling
Date of publication
None
Maintainer
Bart P.P. van Houte <bvhoute@few.vu.nl>
License
GPL (>= 3)
Version
1.28.0

View on Bioconductor

Man pages

CGHnormaliter
Iterative normalization of aCGH data
CGHnormaliter-internal
Internal CGHnormaliter functions
CGHnormaliter-package
This package implements the CGHnormaliter algorithm which is...
CGHnormaliter.write.table
Print normalized aCGH data to a file
Leukemia
Array CGH experiment data on childhood acute lymphoblastic...

Files in this package

CGHnormaliter/DESCRIPTION
CGHnormaliter/NAMESPACE
CGHnormaliter/R
CGHnormaliter/R/CGHnormaliter-internal.R
CGHnormaliter/R/CGHnormaliter.R
CGHnormaliter/build
CGHnormaliter/build/vignette.rds
CGHnormaliter/data
CGHnormaliter/data/Leukemia.txt
CGHnormaliter/data/datalist
CGHnormaliter/inst
CGHnormaliter/inst/doc
CGHnormaliter/inst/doc/CGHnormaliter.R
CGHnormaliter/inst/doc/CGHnormaliter.Rnw
CGHnormaliter/inst/doc/CGHnormaliter.pdf
CGHnormaliter/man
CGHnormaliter/man/CGHnormaliter-internal.Rd
CGHnormaliter/man/CGHnormaliter-package.Rd
CGHnormaliter/man/CGHnormaliter.Rd
CGHnormaliter/man/CGHnormaliter.write.table.Rd
CGHnormaliter/man/Leukemia.Rd
CGHnormaliter/vignettes
CGHnormaliter/vignettes/CGHnormaliter-method.pdf
CGHnormaliter/vignettes/CGHnormaliter.Rnw
CGHnormaliter/vignettes/CGHnormaliter.bib