CGHnormaliter.write.table: Print normalized aCGH data to a file

Description Usage Arguments Details Author(s) References See Also Examples

View source: R/CGHnormaliter.R

Description

This function stores the results of a CGHnormaliter normalization into a plain text file.

Usage

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  CGHnormaliter.write.table(input, data.type=c("normalized","segmented","called"), file=paste(data.type,".txt", sep=""))

Arguments

input

result object of a CGHnormaliter normalization.

data.type

type of aCGH data to store.

file

file name to store the data in.

Details

Available aCGH data types are:

The selected data are stored into a tabseparated file with the specified file name.

Author(s)

Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

References

Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling, Walter Pirovano and Jaap Heringa. CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations. BMC Genomics, 10:401, 2009.

See Also

CGHnormaliter

Examples

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  data(Leukemia)
  ## Normalize the intensity ratios
  ## Not run: result <- CGHnormaliter(Leukemia)
  ## Write the result to a file
  ## Not run: CGHnormaliter.write.table(result)
  ## Not run: CGHnormaliter.write.table(result, type="segmented")
  ## Not run: CGHnormaliter.write.table(result, type="called", file="mycalls.txt")

CGHnormaliter documentation built on Nov. 1, 2018, 4 a.m.