Leukemia: Array CGH experiment data on childhood acute lymphoblastic...
In CGHnormaliter: Normalization of array CGH data with imbalanced aberrations.
Description
Usage
Format
Source
References
Description
A dataframe containing 30180 rows and 10 columns, representing the array CGH data of 3 ALL samples.
Usage
1
Format
A dataframe containing the following 10 columns:
- CloneID
The unique identifiers of array elements.
- Chromosome
Chromosome number of each array element.
- Start
Chromosomal start position in bp of each array element.
- End
Chromosomal end position in bp of each array element.
- Case1.test
Background corrected test intensity values for sample 1.
- Case1.ref
Background corrected reference intensity values for sample 1.
- Case2.test
Background corrected test intensity values for sample 2.
- Case2.ref
Background corrected reference intensity values for sample 2.
- Case3.test
Background corrected test intensity values for sample 3.
- Case3.ref
Background corrected reference intensity values for sample 3.
Source
Provided by the authors (see references).
References
Paulsson K, Heidenblad M, Morse H, Borg A, Fioretos T, Johansson B: Identication of cryptic aberrations and characterization of translocation breakpoints using array CGH in high hyperdiploid childhood acute lymphoblastic leukemia. Leukemia 2006, 20:2002-2007.
CGHnormaliter documentation built on Nov. 8, 2020, 7 p.m.
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Description Usage Format Source References
Description
A dataframe containing 30180 rows and 10 columns, representing the array CGH data of 3 ALL samples.
Usage
1 |
Format
A dataframe containing the following 10 columns:
- CloneID
The unique identifiers of array elements.
- Chromosome
Chromosome number of each array element.
- Start
Chromosomal start position in bp of each array element.
- End
Chromosomal end position in bp of each array element.
- Case1.test
Background corrected test intensity values for sample 1.
- Case1.ref
Background corrected reference intensity values for sample 1.
- Case2.test
Background corrected test intensity values for sample 2.
- Case2.ref
Background corrected reference intensity values for sample 2.
- Case3.test
Background corrected test intensity values for sample 3.
- Case3.ref
Background corrected reference intensity values for sample 3.
Source
Provided by the authors (see references).
References
Paulsson K, Heidenblad M, Morse H, Borg A, Fioretos T, Johansson B: Identication of cryptic aberrations and characterization of translocation breakpoints using array CGH in high hyperdiploid childhood acute lymphoblastic leukemia. Leukemia 2006, 20:2002-2007.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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