stepNorm: Stepwise normalization functions for cDNA microarrays
Version 1.48.0

Stepwise normalization functions for cDNA microarray data.

Browse man pages Browse package API and functions Browse package files

AuthorYuanyuan Xiao <yxiao@itsa.ucsf.edu>, Yee Hwa (Jean) Yang <jean@biostat.ucsf.edu>
Bioconductor views Microarray Preprocessing TwoChannel
Date of publicationNone
MaintainerYuanyuan Xiao <yxiao@itsa.ucsf.edu>
LicenseLGPL
Version1.48.0
URL http://www.biostat.ucsf.edu/jean/
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("stepNorm")

Man pages

calcAIC: Extract AIC from a Fitted Model
calcBIC: Extract BIC from a Fitted Model
fit2DWithin: Bivariate location normalization function for cDNA microarray...
fitWithin: Simple location normalization function for cDNA microarray...
maCompPlate2: Generate plate IDs
makeStepList: Construction of a stepwise normalization list
marrayFitClass: Class "marrayFit", storing parameters and results of...
seqWithinNorm: Sequential within-slide normalization function
stepNorm-internal: Internal stepNorm functions
stepWithinNorm: Stepwise within-slide normalization function
withinNorm: Within-slide normalization function for cDNA spotted...

Functions

MedianSmooth Man page Source code
aov2Dfit Man page Source code
calcAIC Man page Source code
calcBIC Man page Source code
calcEnp Man page Source code
fit2DWithin Man page Source code
fitWithin Man page Source code
loess2Dfit Man page Source code
loessfit Man page Source code
maCompPlate2 Man page Source code
makeStepList Man page Source code
marrayFit Man page
marrayFit-class Man page
medfit Man page Source code
noFit Man page Source code
rlm2Dfit Man page Source code
rlmfit Man page Source code
seqWithinNorm Man page Source code
spatialMedfit Man page Source code
square Man page Source code
stepWithinNorm Man page Source code
withinNorm Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/stepNorm.R
inst
inst/otherDocs
inst/otherDocs/Rplots.ps
inst/otherDocs/stepNorm.Rnw
inst/otherDocs/stepNorm.pdf
inst/otherDocs/stepNorm.tex
inst/otherDocs/stepProcedure.pdf
man
man/calcAIC.Rd
man/calcBIC.Rd
man/fit2DWithin.Rd
man/fitWithin.Rd
man/maCompPlate2.Rd
man/makeStepList.Rd
man/marrayFitClass.Rd
man/seqWithinNorm.Rd
man/stepNorm-internal.Rd
man/stepWithinNorm.Rd
man/withinNorm.Rd
stepNorm documentation built on May 20, 2017, 10:04 p.m.