stepNorm: Stepwise normalization functions for cDNA microarrays

Stepwise normalization functions for cDNA microarray data.

Author
Yuanyuan Xiao <yxiao@itsa.ucsf.edu>, Yee Hwa (Jean) Yang <jean@biostat.ucsf.edu>
Date of publication
None
Maintainer
Yuanyuan Xiao <yxiao@itsa.ucsf.edu>
License
LGPL
Version
1.46.0
URLs

View on Bioconductor

Man pages

calcAIC
Extract AIC from a Fitted Model
calcBIC
Extract BIC from a Fitted Model
fit2DWithin
Bivariate location normalization function for cDNA microarray...
fitWithin
Simple location normalization function for cDNA microarray...
maCompPlate2
Generate plate IDs
makeStepList
Construction of a stepwise normalization list
marrayFitClass
Class "marrayFit", storing parameters and results of...
seqWithinNorm
Sequential within-slide normalization function
stepNorm-internal
Internal stepNorm functions
stepWithinNorm
Stepwise within-slide normalization function
withinNorm
Within-slide normalization function for cDNA spotted...

Files in this package

stepNorm/DESCRIPTION
stepNorm/NAMESPACE
stepNorm/R
stepNorm/R/stepNorm.R
stepNorm/inst
stepNorm/inst/otherDocs
stepNorm/inst/otherDocs/Rplots.ps
stepNorm/inst/otherDocs/stepNorm.Rnw
stepNorm/inst/otherDocs/stepNorm.pdf
stepNorm/inst/otherDocs/stepNorm.tex
stepNorm/inst/otherDocs/stepProcedure.pdf
stepNorm/man
stepNorm/man/calcAIC.Rd
stepNorm/man/calcBIC.Rd
stepNorm/man/fit2DWithin.Rd
stepNorm/man/fitWithin.Rd
stepNorm/man/maCompPlate2.Rd
stepNorm/man/makeStepList.Rd
stepNorm/man/marrayFitClass.Rd
stepNorm/man/seqWithinNorm.Rd
stepNorm/man/stepNorm-internal.Rd
stepNorm/man/stepWithinNorm.Rd
stepNorm/man/withinNorm.Rd